Remove Rails 3 attr accessible from models (#1691)

Template Versioning ...

This commit is a complete refactor of all the pages involved with Template creating/editing. The database, models, controllers, views and JS have all been changed.

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removed unused template methods from Plan model and removed references to 'Dmptemplate' from tests

started updating model scopes and began creating new unit tests and test_helper methods

Rebased with template customization fixes. updated tests and latest_version queries

Grouping class methods. Grouping scope methods into separate class

removed Template::valid scope method in favour of Template::unarchived

Moved class methods to scope rails flavour.

Removed Template::get_public_published_template_versions method

Model#deep_copy instead of Model::deep_copy. Model#deep_copy without side effects

added customize method to model

updated customize to use new deep_copy and added some tests

fixed test

fixed broken tests after latest PR. DMPRoadmap/roadmap#1341

generate_version with unit test associated

customize with unit test associated

upgrade_customization first attempt

added tests for upgrade_customization

upgrade_customization with several unit test associated

added generate_copy

fixed tests and added test_helper for phase/section/question/annotation/question_option equality for verifying template copy/version/customize

added comments

finished up tests

Removed template.update! in favour of a more re-usable deep_copy with atomic saving.

removed new_copy.save! from templates_controller#copy. Atomic save for upgrade_customization method

renamed to bang notation generate_copy, generate_version, customize and upgrade_customization

question mark methods for generate_version, customize and upgrade_customization

unique indices for template and template customisations. #1341

init functionality for versionable concern

updated errors, added get_new

unique indices for template and template customisations. #1341

new schema dump generated from rails

manually set up the default for org.links

Fix for rake tasks

updated template controller and tests

finished tests for template controller update http verbs for customize and copy methods

updated template versioning intgeration to use new test_helper methods

updated template controller and tests

finished tests for template controller update http verbs for customize and copy methods

updated template versioning intgeration to use new test_helper methods

wired in the new versionable concern

wired in the new versionable concern

updated query structure in template_filter

updated routes and paths

moved phases controller to org_admin namespace

changes to phase model and unit tests

started moving phase views to new org_admin namespace and tests

fixed tests

started fixing up references to moved plan/phase status

started fixing up references to moved plan/phase status

moved js file, fixed tests and manually checked pages

set schema.rb back to sprint2

added in versionable concern and fixed tests

removed unused phase_status method

removed test for phase_status method

fixed issue with template visibility for the default template

fixed issue with default templates and versioning/customization

versionable_test.rb

versionable concern updated

find_or_generate_version! into template, test associated

annotation and question model using has_one through adequately

templates_controller#update action refactored

tweaks to template_test

get_new and get_modifiable test cases for RuntimeError capture

passing parent object ids to children during deep_copy

updated question_option and annotation deep copy

removed old deep_copy method from section model and updated unit tests

removed old deep_copy method from section model and updated unit tests

updates to sections controller, model, routes and tests

fixed broken tests

updated both phases and sections controller to use versionable

fixed tests

started work on new template show/edit

finished up templates UI

fixed tests

consolidated form

consolidated form

fixed history page

removed old view

fixed test

fixed typo in en_US app.po

removed old deep_copy method from section model and updated unit tests

updates to sections controller, model, routes and tests

fixed broken tests

updated both phases and sections controller to use versionable

fixed tests

fixed tests and missing policy

fixed tests

created separate routes for each template index tab

updates to template index page structure

added callback to template model to ensure only one published version

finished up first pass of templates index page

fixed tests

removed current_tab from phase views. DMPRoadmap/roadmap#1407

section#create refactored. DMPRoadmap/roadmap#1407

sections loaded on demand for a phase. DMPRoadmap/roadmap#1407

ExpandAll triggers click instead of using collapse. DMPRoadmap/roadmap#1407

added phase/section/question overview back to template details page

send customizer to show section page

updated button text

updated history controller action

updated controller

updated views

added customization distinction to page title

updates to phase/section to introduce referrer logic and added section-show for customizable

removed old 'edit phase details button

removed edit question partial from section show

tweaks to templates index pages

fixed tests and default scope

added test for default customizations

added namespace to org section of templates index and made autocomplete combobox aware of form namespace

fixed issue with container view

removed old policies

updated statuses of templates

fixed typo in phases/overview view. DMPRoadmap/roadmap#1377

annotations moved to org_admin namespace. DMPRoadmap/roadmap#1377

annotations_controller#(create|update|destroy) with test associated. DMPRoadmap/roadmap#1377

flash notice for successful action carried out. DMPRoadmap/roadmap#1377

flash notice for success actions. create? method for annotation policy. DMPRoadmap/roadmap#1377

started refactor of sections/questions

fixed nil references. DMPRoadmap/roadmap#1462

annotations as fields_for nested attributes. DMPRoadmap/roadmap#1462

commented out version check on template update

removed invalid test

fixed reference to moved partials and family to family_id

fixed question update

updated guidances to work with modified themes form

finished up questions

fixed broken tests

updated preview and customize

fixed issue with sections index

cleaned up remaining issues with template editing and customization

added in check for nil phase to sections create

any user with readable rights should see download tab for a plan. DMPRoadmap/roadmap#1483

updated history to use new template.draft? logic to determine when to show draft icon

added latest check

added check for default option

added checks for historical and customization on preview page

added redirect to show if template is customization

added redirect to show if template is customization

updated ajax success/error for section display

fixed issues with create plan template selection and changing plan visibility

forgot to include model change

reverted schema.rb changes

adding org to chained scope in order to have searchable and sortable templates. DMPRoadmap/roadmap#1495

improved customization template search against all funder templates. DMPRoadmap/roadmap#1499

started work on adding edit/show/new/cancel buttons for questions

added toggle functionality between question show/edit

removed whitespace

made text area the default

updated template statuses

updated class to fix layout

introducing event delegation for sections/questions/annotations. DMPRoadmap/roadmap#1502

removed console.log

fixed JS for section/question

annotation loading tinymce when section show only permits customisation. DMPRoadmap/roadmap#1502

fixed issue with customizating by adding a section/question

removed reload

set focus to first invalid form input

fixed placement of focus for new validation.js

Added joins for customizations table

updated query

fixed initial numbering for new phases/sections

reverted referrer change

made section fields required

added ariatise to new section form

fixed referrer check

fixed inconsistent status message for transfer customization workflow

fixed issue with csv download

fixed csv header

fixed links for customization on history page

updated sections index so new section doesn't show unless its the current template

Added joins for customizations table

added includes to customisable query

fixed issue with paginable history

fixed merge conflicts in templates_controller and questions/_show.html.erb

resolved additional rebase conflict

added base_template_org and updated write plan to show correct org in guidance tab ...

updated example answers logic

added missing code to answers conroller and fixed test

updated org links to use same logic as template links. display org name if no logo ...

removed unecessary line form orgs controller

fixed linter complaint

fixed tests broken by org.links addition

bugfixes to allow tests to work

updated tests to work after annotations changes

some cleanup of irrelevant objects (e.g. removal of remaining OrganisationType)

removed old references to the Amoeba gem which was used to clone models. Fixed typo in Question.deep_copy. Added generic test for deep_copy methods.

added unit tests for question. removed unused methods from question. fixed guidance_for_question method so that it does not require us to pass in itself (was qustion.guidance_by_question(question, org) - now question.guidance_for_org(org)) and updated template that calls method accordingly

switched visibility to be a bit flag using FlagShihTzu instead of a lookup table. adjusted db migration. Removed all of the empty stub test files generated by the rails scaffolding mechanism.

Merging master (#20) ...

* added data structures for testing

* renamed token_permission_type to plural to follow convention of fixtures

* added gem to allow testing of controllers

* began implimenting testing for projects controller

* fixed auth to reject empty string

* added data structures for testing

* added data structures for testing

* removed old unnecissary data structures from fixtures

* added forgotten view for org-admins giving user's api permissions

* updated .gitignore

* added gem to allow testing of controllers

* began implimenting testing for projects controller

* fixed auth to reject empty string

* added data structures for testing

* added data structures for testing

* removed old unnecissary data structures from fixtures

* added forgotten view for org-admins giving user's api permissions

* updated .gitignore

* fixed leftover merge conflict in .gitignore

* updated org-admin view of users for rails 4.2 compatability

* fiexed a bug where user's api token permissions wouldnt display

* fixed syntax error

* changed guidance_group to guidance_groups for consistancy with api spec

* fix roadmap route

* bugfixing auth for api

* removed token_permission as it was accidentially re-added by a merge

* added gem to allow testing of controllers

* began implimenting testing for projects controller

* fixed auth to reject empty string

* added data structures for testing

* added data structures for testing

* removed old unnecissary data structures from fixtures

* added forgotten view for org-admins giving user's api permissions

* updated .gitignore

* removed old unnecissary data structures from fixtures

* updated .gitignore

* updated org-admin view of users for rails 4.2 compatability

* fiexed a bug where user's api token permissions wouldnt display

* fixed syntax error

* changed guidance_group to guidance_groups for consistancy with api spec

* bugfixing auth for api

* modified schema

* removed admin interface to token_permission, another forgotten side-effect

* removed admin interface to token_permission, another forgotten side-effect

* modified return structure of guidance_groups API to reflect current spec

* removed guidances api endpoint as no longer necissary

* added templates api endpoint

* commit

* commit

* initial commit of untested statistics API

* updated Statistics API and added bugfixes

* added aditional seeds for api token_permission_types

* added docs for stats api, also passing tests

* added fucntionality to give org_admin priveleges through the org_admin interface

* corrected statistics API to handle null dates and filter projects correctly

* addedrestriction that users must be confirmed to be counted by stats api

* added documentation to dmptemplates api controller

* added org_id field to plans metadata as a returned plan can belong to somebody else's organisation

* initial passover of removing magic strings

* added comment to I18n_constant and fixed missing magic string

* fixed the magic strings function

* removed duplicate gem from gemfile

* migrations and routes tests

* changed gem dependancies and fixed syntax bug

* fixed bug where show plans view only displayed first letter of columns

* aliased

* added documentation to organisation, phase, and part of plans

* added documentation to organisation, phase, and part of plans

* added documentation to model for plan

* added documentation to project model

* added documentation to project_group model

*  added documentation to remaining models

* fixed admin logout bug

*  removed hard-coded references to DCC

* fixed bug in dmptemplate with magicstrings

* dropdown and org language setting

* test

* commit

* migrations and routes tests

* aliased

* dropdown and org language setting

* test

* remove typo

* fixed parentheses bug in api/projects_controller

* fix

* merging

* remove git merge conflicts artifacts

* added gemfile, environments, and an initaliser to allow merge

* fix locales picking

* super_admin area for languages, changes to langauge initializer to fix migrations issue and org language priority in user language picking

* add association between organisation and language

DMPonline4 - RAILS 4.0 (#4) ...

Merging the initial DMPOnline4 codebase into Roadmap

DMPonline4, this code was designed and implemented by the Digital
Curation Centre (DCC)
DMPonline runs in Ruby 2.1 and Rails 4.0, there is a mysql database.