Replace YARD documentation with Tomdoc ...

These changes use the YARD gem, but in the lighter Tomdoc format.

You can read more about Tomdoc here: https://tomdoc.org

Refactored model code for better readability

Update uniqueness validation on GuidanceGroup

Add scope to Guidance name validation

Update validations with suggestions from team

Add extra validations for all models ...

- Includes specs using the Shoulda gem
- Includes a refactoring of update_numbers to a "sortable" abstraction

Add annotate gem for models and Gemfile

Remove Rails 3 attr accessible from models (#1691)

public DMPs paginablerised. DMPRoadmap/roadmap#1055 ...

public DMPs templates paginablerised. DMPRoadmap/roadmap#1055

plans visible to org admin paginablerised. DMPRoadmap/roadmap#1055

guidances paginablerised. DMPRoadmap/roadmap#1055

guidance_groups paginablerised. DMPRoadmap/roadmap#1055

remove tablesorter class from paginable views. Introduce Clear search results when ALL search results are active. DMPRoadmap/roadmap#1055

guidance policy for paginable/guidance/index/:page. DMPRoadmap/roadmap#1055

Make templates page usable for Org Admins and Super Admins ...

started work on super admin templates page

consolidated org_admin and super_admin templates page

moved template logic to org_admin module and consolidated logic for super/org admins

switched from submit button click to form submit

fixed issue with unused js var

fixed broken templates controller tests

switched back to submit button

updated template_options route in integration test

fixed broken integration tests caused by moving templates to org_admin namespace

added tests for copy template

added button to get back to 'all templates' page from template edit page

renamed delete button from 'Cancel' to 'Delete' and added proper cancel button to edit section view

made recommended adjustments and accounted for new template visibility functionality

switched out scopes in favor of flagshihtzu helpers

moved link to Themes to Admin menu

fixed broken tests for the public_pages controller

fixes for tests

refactored template current version queries

pulled in customization view changes

fixed merge conflicts

fixes error with prefetching, now passes tests

api updates

Plan duplication functionality. ...

Ability to Create a Plan copy

removing guidances being copied over since they requrie omly references

Plan deep copy method to duplicate plans (associated answers and guidance_groups)

Append 'Copy of' to the title of a duplicated plan

Fixed failing functional & translation tests

Merge branch 'development' of https://github.com/DigitalCurationCentre/roadmap into development

updated models to relfect new name for join table between plans and guidance groups. fixes #198

added a test that searches for missing translations. Added specific error messages for model validations. Added some devise controlled error messages to pot/po files DMPRoadmap/roadmap#236

completed fixes for guidances and guidance_groups controllers

merge in changes from origin

first port of plan creation and editing to new data model

Added a managing org and funder scope to Org. Updated methods on Guidance and guidanceTest to work with new schema. Added guidance and guidance_group tests

fixed references to organisation in guidance_group methods. finished guidance_group unit tests

started seeds.rb rebuild to work with new schema. Removed guidance_in_group association from guidance. added some attr_accessible attributes

resolved merge conflicts

updated additional parts of the admin_phase view to use the new schema's data access. Additionally changed models for suggested_answer, user, guidance_group and question to better reflect the associations in the schema

finished guidance_groups test. started on guidance tests

replaces Organisation. with Org. in all files

began changing models to reflect the new model names and relationships, additionally deleting some old/unused models which no longer apply in the new schema.

added migration to add foreign keys. Also needed to remove the temporary models, and update existing models to reflect the new relationships