diff --git a/biblio-tools/examples.http b/biblio-tools/examples.http index c3a9396..5d86ef8 100644 --- a/biblio-tools/examples.http +++ b/biblio-tools/examples.http @@ -42,6 +42,23 @@ ] ### +# unpaywall/works/expand +# POST http://localhost:31976/v1/unpaywall/works/expand?indent=true HTTP/1.1 + +POST https://biblio-tools.services.inist.fr/v1/unpaywall/works/expand?indent=true HTTP/1.1 +Content-Type: application/json + +[ + { "value": "10.1016/j.fuel.2018.07.071" }, + { "value": "10.1007/s10980-018-0699-8" }, + { "value": "10.1159/000490004" }, + { "value": "10.1016/j.memsci.2018.08.024"}, + { "value": "10.1029/2018jd029272"}, + { "value": "10.4000/edc.9014"}, + { "value": "unknown"} +] +### + # crossref/prefixes/1 POST https://biblio-tools.services.inist.fr/v1/crossref/prefixes/expand?indent=true HTTP/1.1 Content-Type: application/json diff --git a/biblio-tools/swagger.json b/biblio-tools/swagger.json index 415a1a6..5367fcd 100755 --- a/biblio-tools/swagger.json +++ b/biblio-tools/swagger.json @@ -1,6 +1,6 @@ { "info": { - "version": "1.4.4" + "version": "1.5.1" }, "tags": [ { diff --git a/biblio-tools/v1/unpaywall/works/expand.ini b/biblio-tools/v1/unpaywall/works/expand.ini new file mode 100644 index 0000000..a6b2ada --- /dev/null +++ b/biblio-tools/v1/unpaywall/works/expand.ini @@ -0,0 +1,112 @@ +# OpenAPI Documentation - JSON format (dot notation) +mimeType = application/json + +post.operationId = post-v1-unpaywall-works-expand +post.description = Récupération des informations associées à un DOI dans la base Unpaywall +post.summary = Récupération à partir d'un tableau d'objets avec a minima un champ value contenant le DOI +post.tags.0 = biblio-tools +post.requestBody.content.application/json.example.0.id = 1 +post.requestBody.content.application/json.example.0.value = 10.4000/edc.9014 +post.requestBody.content.application/json.schema.$ref = #/components/schemas/JSONStream +post.requestBody.required = true +post.responses.default.content.application/json.example.0.id = 1 +post.responses.default.content.application/json.example.0.value = { ... } +post.responses.default.content.application/json.schema.$ref = #/components/schemas/JSONStream +post.responses.default.description = une réponse sous forme d'un objet ou n/a pour chaque DOI +post.parameters.0.description = Indenter le JSON résultant +post.parameters.0.in = query +post.parameters.0.name = indent +post.parameters.0.schema.type = boolean + +# Rétablissons la coloration syntaxique (une ou deux apostrophes selon les besoins): ' + +# Necessary plugins +[use] +plugin = basics +plugin = analytics +plugin = storage + +# Flow configuration +[JSONParse] +separator = * + +[env] +path = size +value = 10 + +path = indent +value = true + +path = token +value = env('UNPAYWALL_API_KEY') + +[assign] +path = value +value = get('value').toLower() + +# Pour traiter par lot on groupe puis on utilise spawn qui crée un buffer par lot +[group] +size = env('size') + +[spawn] +[spawn/ungroup] +[spawn/bufferize] + +# On réalise un mapping dynamique sur le champ value (et on sauvegarde les correspondances trouvées) +[spawn/combine] +path = value +default = n/a +primer = get('bufferID') +prepend = buffers +append = transit +#cacheName = post-v1-unpaywall-works-expand + +[spawn/combine/group] +size = env('size') + +[spawn/combine/replace] +path = dois +value = self().map('value').map(x => JSON.stringify(x)).join(',') + +# On crée un objet contenant toutes les valeurs nécessaires pour créer une requête +[spawn/combine/replace] +path = query +; value = fix('{GetByDOI(dois:[', self.dois, ']){doi, is_oa, oa_status, has_repository_copy, best_oa_location { host_type }}}').join('') +value = fix('{GetByDOI(dois:[', self.dois, ']){doi,data_standard,genre,is_paratext,is_oa,journal_is_in_doaj,journal_is_oa,journal_issns,journal_issn_l,journal_name,oa_status,has_repository_copy,published_date,publisher,title,updated,year,oa_locations{host_type,is_best,license,url,url_for_landing_page,url_for_pdf},first_oa_location{host_type,is_best,license,pmh_id,updated,url,url_for_landing_page,url_for_pdf,version}}}').join('') + +[spawn/combine/URLStream] +;url = https://unpaywall.inist.fr/api/graphql +url = http://vpunpaywallmir.intra.inist.fr:59700/api/graphql +header = env('token').prepend('x-api-key:') +path = data.GetByDOI.* +timeout = 5000 +noerror = false + +# On supprime les réponses qui n'ont pas abouti +[spawn/combine/drop] +path = is_oa + +# On crée l'object attendu par combine { id, value } pour faire le mapping +[spawn/combine/assign] +path = id +value = get('doi').toLower() + +# On nettoie l'objet en supprimant les champs temporaires +[spawn/exchange] +value = self().omit('bufferID') + +# On simplifie la structure +[assign] +path = value +value = get('value.value', self.value) +# On marque les réponses qui n'ont pas abouti +[swing] +test = has('value.is_oa') +reverse = true + +[swing/assign] +path = value +value = fix('n/a') + +[dump] +indent = env('indent') diff --git a/loterre-resolvers/swagger.json b/loterre-resolvers/swagger.json index 9ac35b2..28712a0 100644 --- a/loterre-resolvers/swagger.json +++ b/loterre-resolvers/swagger.json @@ -1,6 +1,6 @@ { "info": { - "version": "1.1.1" + "version": "1.1.2" }, "tags": [ { diff --git a/loterre-resolvers/v1/D63/identify.ini b/loterre-resolvers/v1/D63/identify.ini index a25c9f8..9161cce 100644 --- a/loterre-resolvers/v1/D63/identify.ini +++ b/loterre-resolvers/v1/D63/identify.ini @@ -28,7 +28,7 @@ [env] path = primer -value = https://www.loterre.fr/wp-content/uploads/2020/07/Communes.xml +value = https://www.loterre.fr/wp-content/uploads/2022/06/Communes.xml # Necessary plugins [use] diff --git a/mapping-tools/swagger.json b/mapping-tools/swagger.json index 0636ed7..47aab55 100644 --- a/mapping-tools/swagger.json +++ b/mapping-tools/swagger.json @@ -1,6 +1,6 @@ { "info": { - "version": "1.5.0" + "version": "1.6.2" }, "servers": [{ "url": "{scheme}://{hostname}", @@ -148,7 +148,7 @@ "orcid": { "type": "string", "pattern": "https:\/\/orcid\\.org\/)?(\\d{4}-){3}\\d{4}", - "example": "https://orcid.org/0000-0003-1301.5.05" + "example": "https://orcid.org/0000-0003-1301.6.25" }, "IdChaines": { "type": "array", diff --git a/mapping-tools/v1/apc/2018/cout-par-doi.csv b/mapping-tools/v1/apc/2018/cout-par-doi.csv new file mode 100644 index 0000000..f58c23a --- /dev/null +++ b/mapping-tools/v1/apc/2018/cout-par-doi.csv @@ -0,0 +1,2724 @@ +DOI_C,Montant def +10.1364/boe.9.000142,1397 +10.1364/boe.9.000245,1397 +10.1016/j.jcde.2017.11.005,1460 +10.1111/1751-7915.12797,2098 +10.7554/elife.32041,2025 +10.1111/eva.12522,1580 +10.1371/journal.pone.0190340,1272 +10.1038/micronano.2017.69,2000 +10.7554/elife.29555,2025 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+10.5194/esd-9-313-2018,1500 diff --git a/mapping-tools/v1/apc/2018/cout-par-doi.ini b/mapping-tools/v1/apc/2018/cout-par-doi.ini new file mode 100644 index 0000000..d3beb1a --- /dev/null +++ b/mapping-tools/v1/apc/2018/cout-par-doi.ini @@ -0,0 +1,19 @@ +append = dump?indent=true +# Lit le fichier TSV, et renvoie du JSON [{id, value}] +[use] +plugin = basics +plugin = analytics + +[files] + +[CSVParse] +separator = , + +[CSVObject] + +[replace] +path = id +value = get("DOI_C") + +path = value +value = get("Montant def") diff --git a/mapping-tools/v1/apc/2018/doi.ini b/mapping-tools/v1/apc/2018/doi.ini new file mode 100644 index 0000000..d45a5ad --- /dev/null +++ b/mapping-tools/v1/apc/2018/doi.ini @@ -0,0 +1,44 @@ +# OpenAPI Documentation - JSON format (dot notation) +mimeType = application/json + +post.operationId = post-v1-apc-par-doi-json +post.requestBody.content.application/json.example.0.id = 0 +post.requestBody.content.application/json.example.0.value = 10.1364/boe.9.000142 +post.requestBody.content.application/json.schema.$ref = #/components/schemas/IdChaines +post.requestBody.required = true +post.responses.default.content.application/json.example.0.id = 0 +post.responses.default.content.application/json.example.0.value = 1234 +post.responses.default.content.application/json.schema.$ref = #/components/schemas/IdChaines +post.responses.default.description = Renvoie un JSON, composé d `id`, `value`, avec `value` étant un cout APC. +post.description = Renvoie l'identifiant idRef correspondant à l'identifiant halAuthorId envoyé. +post.tags.0: mapping +post.summary: Propose un cout APC par DOI +post.parameters.0.description = Indenter le JSON résultant +post.parameters.0.in = query +post.parameters.0.name = indent +post.parameters.0.required = false +post.parameters.0.schema.type = boolean + +[use] +plugin = basics +plugin = analytics + +[JSONParse] + +# Homogenize ID: url, string and number to an url +[expand] +path = value +cacheName = post-v1-apc-par-doi-json + +[expand/combine] +path = value +default = n/a +primer = ./cout-par-doi.csv +file = ./cout-par-doi.ini + +[assign] +path = value +value = get("value.value") + +[JSONString] +indent = env('indent', true)