diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index f2c4fdf..7f5669b 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -593,6 +593,46 @@ ## Après le déploiement +### Lancer les tests de non-régression + +Si on a seulement ajouté une ou plusieurs routes à une instance déjà en +production, vérifier que les anciennes routes continuent à fournir les résultats +attendus. + +```bash +npx hurl /tests.hurl +``` + +### Générer les tests + +Cette section a pour objectif d'ajouter les nouvelles routes de l'instance, ou +de créer le fichier de tests s'il n'existait pas encore. + +Dans le répertoire racine du dépôt, lancer + +```bash +make generate-examples-tests +``` + +Puis, vérifier qu'ils passent bien (puisqu'on vient de les générer, cela vérifie +seulement que deux appels identiques ont les mêmes résultats). + +```bash +npx hurl /tests.hurl +``` + +### Ajouter les tests au dépôt + +Évidemment, il ne faut pas oublier d'ajouter le fichier de tests au dépôt. +À ce stade, un mainteneur du dépôt peut le pousser directement dans la branche +principale, sinon il faut refaire une *Pull Request*. + +```bash +git add /tests.hurl +git commit -m "test(instance): Add tests.hurl" +git push +``` + ### Vérifier que le swagger fonctionne Si c'est une nouvelle instance, il se peut qu'elle n'apparaisse pas diff --git a/Makefile b/Makefile index 8f0166f..374a342 100644 --- a/Makefile +++ b/Makefile @@ -45,6 +45,9 @@ example-metadata: ## Give an example metadata, from examples.http, e.g. make example-metadata affiliations-tools 3 @./bin/generate-example-metadata.mjs $(filter-out $@,$(MAKECMDGOALS)) +generate-example-tests: ## Convert examples.http to test.hurl, e.g. make generate-example-tests affiliations-tools > affiliations-tools/tests.hurl + @./bin/generate-example-tests.mjs $(filter-out $@,$(MAKECMDGOALS)) > $(filter-out $@,$(MAKECMDGOALS))/tests.hurl + # Remove error message about lacking rules for targets' parameters %: @: diff --git a/README.md b/README.md index fbf50f3..61b4a36 100644 --- a/README.md +++ b/README.md @@ -327,6 +327,25 @@ Voir aussi [Tester](#tester). +### Fichier de test + +Dans la plupart des cas, on peut générer un fichier `tests.hurl` à partir d'un +fichier `examples.http`. +Il y a une commande `make generate-example-tests address-kit`. + +Pour lancer le fichier, à condition d'avoir installé les paquets npm: + +```bash +$ npx hurl --test address-kit/tests.hurl +./address-kit/tests.hurl: Running [1/1] +./address-kit/tests.hurl: Success (2 request(s) in 8858 ms) +-------------------------------------------------------------------------------- +Executed files: 1 +Succeeded files: 1 (100.0%) +Failed files: 0 (0.0%) +Duration: 8860 ms +``` + ## Créer une version Afin de faciliter le déploiement (et de le limiter à un répertoire), on peut diff --git a/address-kit/tests.hurl b/address-kit/tests.hurl new file mode 100644 index 0000000..0c68807 --- /dev/null +++ b/address-kit/tests.hurl @@ -0,0 +1,117 @@ +POST https://address-kit.services.istex.fr/v1/cnrsunit/cnrsunit?indent=true +content-type: application/json +[ +{"id":1, "value":"université sciences et technologies bordeaux 1 institut national de physique nucléaire et de physique des particules du cnrs in2p3 umr5797"}, +{"id":2,"value":"uar76 / ups76 centre national de la recherche scientifique cnrs institut de l'information scientifique et technique inist"}, +{"id":3,"value":"centre de recherches sur la géologie des matières premières minérales et énergétiques cregu université de lorraine ul umr7359 centre national de la recherche scientifique"}, +{"id":4,"value":"umr_d161 institut de recherche pour le développement ird um34 aix marseille université amu umr7330 collège de france cdf institution institut national des sciences de l'univers insu cnrs umr7330 centre national de la recherche scientifique cnrs umr1410 institut national de recherche pour l'agriculture l'alimentation et l'environnement inrae centre européen de recherche et d'enseignement des géosciences de l'environnement cerege europôle méditerranéen de l'arbois"} +] + +HTTP 200 +[{ + "id": 1, + "value": [ + "Laboratoire de Physique des 2 infinis - Bordeaux", + "LP2I - Bordeaux", + "199512079F", + "Institut d'écologie et environnement" + ] +}, +{ + "id": 2, + "value": [ + "Institut de l'information scientifique et technique", + "INIST", + "198822446E", + "Direction générale déléguée à la science" + ] +}, +{ + "id": 3, + "value": [ + "GeoRessources", + "GEORESSOURCES", + "201320575M", + "Institut des sciences de l'ingénierie et des systèmes" + ] +}, +{ + "id": 4, + "value": [ + "Centre européen de recherche et d'enseignement de géosciences de l'environnement", + "CEREGE", + "201220322S", + "Institut des sciences humaines et sociales" + ] +}] + +POST https://address-kit.services.istex.fr/v1/affiliationcountry/affilcountry?indent=true +content-type: application/json +[ +{"id":1,"value":"université sciences et technologies bordeaux 1 institut national de physique nucléaire et de physique des particules du cnrs in2p3 UMR5797"}, +{"id":2,"value":"uar76 / ups76 centre national de la recherche scientifique cnrs institut de l'information scientifique et technique inist"}, +{"id":3,"value":"centre de recherches sur la géologie des matières premières minérales et énergétiques cregu université de lorraine ul umr7359 centre national de la recherche scientifique"}, +{"id":4,"value":"auf der morgenstelle 8, 72076 tuebingen"}, +{"id":5,"value":"z.i. de kermelin,16, rue ampère, 56017 Vannes"}, +{"id":6,"value":"campus de santa apolónia, 5300-253 bragança"}, +{"id":7,"value":"campus romanus de maron"} , +{"id":8,"value":"Inist-CNRS, vandoeuvre les Nancy, France"} +] + +HTTP 200 +[{ + "id": 1, + "value": [ + "France", + "FRA" + ] +}, +{ + "id": 2, + "value": [ + "France", + "FRA" + ] +}, +{ + "id": 3, + "value": [ + "France", + "FRA" + ] +}, +{ + "id": 4, + "value": [ + "Germany", + "DEU" + ] +}, +{ + "id": 5, + "value": [ + "France", + "FRA" + ] +}, +{ + "id": 6, + "value": [ + "Portugal", + "PRT" + ] +}, +{ + "id": 7, + "value": [ + "Unknown", + "N/A" + ] +}, +{ + "id": 8, + "value": [ + "France", + "FRA" + ] +}] diff --git a/affiliation-rnsr/examples.http b/affiliation-rnsr/examples.http new file mode 100644 index 0000000..d65a70c --- /dev/null +++ b/affiliation-rnsr/examples.http @@ -0,0 +1,45 @@ +# Ces exemples peuvent être exécutés directement dans VSCode, en utilisant l'extension REST Client (humao.rest-client) +# Décommenter/commenter les lignes voulues pour tester localement +# @baseUrl=http://localhost:31976 +# @baseUrl=http://affiliation-rnsr.tdmservices.intra.inist.fr/ +@baseUrl=http://affiliation-rnsr.services.istex.fr/ + +### +# @name v2AffiliationRnsr +# WS Affiliation - RNSR - v2 +POST {{baseUrl}}/v2/affiliation/rnsr?indent=true HTTP/1.1 +Content-Type: application/json + +[ + { + "id": 1, + "value": "UAR 76, Inist-CNRS, 2 rue Jean Zay 54500 Vandoeuvre-lès-Nancy" + }, + { + "id": 2, + "value": "Institut Charles Gerhardt, Université de Montpellier" + }, + { + "id":3, + "value": "UMR 7272 - CNRS, 06100 Nice" + } +] + +### +# @name v3AffiliationRnsr +# WS Affiliation - RNSR - v3 +POST {{baseUrl}}/v3/affiliation/rnsr?indent=true HTTP/1.1 +Content-Type: application/json + +[ + { + "id": 1, + "value": "UAR 76, Inist-CNRS, 2 rue Jean Zay 54500 Vandoeuvre-lès-Nancy" + }, + { + "id": 2, + "value": "Institut Charles Gerhardt, Université de Montpellier ; UMR 7272 - CNRS, 06100 Nice" + } +] + +### \ No newline at end of file diff --git a/affiliation-rnsr/tests.hurl b/affiliation-rnsr/tests.hurl new file mode 100644 index 0000000..8c18339 --- /dev/null +++ b/affiliation-rnsr/tests.hurl @@ -0,0 +1,58 @@ +POST https://affiliation-rnsr.services.istex.fr/v2/affiliation/rnsr?indent=true +content-type: application/json +[ + { + "id": 1, + "value": "UAR 76, Inist-CNRS, 2 rue Jean Zay 54500 Vandoeuvre-lès-Nancy" + }, + { + "id": 2, + "value": "Institut Charles Gerhardt, Université de Montpellier" + }, + { + "id":3, + "value": "UMR 7272 - CNRS, 06100 Nice" + } +] + +HTTP 200 +[{ + "id": 1, + "value": "198822446E" +}, +{ + "id": 2, + "value": "200711918D" +}, +{ + "id": 3, + "value": "201220250N" +}] + +POST https://affiliation-rnsr.services.istex.fr/v3/affiliation/rnsr?indent=true +content-type: application/json +[ + { + "id": 1, + "value": "UAR 76, Inist-CNRS, 2 rue Jean Zay 54500 Vandoeuvre-lès-Nancy" + }, + { + "id": 2, + "value": "Institut Charles Gerhardt, Université de Montpellier ; UMR 7272 - CNRS, 06100 Nice" + } +] + +HTTP 200 +[{ + "id": 1, + "value": [ + "198822446E" + ] +}, +{ + "id": 2, + "value": [ + "200711918D", + "201220250N" + ] +}] diff --git a/affiliations-tools/examples.http b/affiliations-tools/examples.http index 081e903..dde72cb 100644 --- a/affiliations-tools/examples.http +++ b/affiliations-tools/examples.http @@ -2,9 +2,11 @@ # Décommenter/commenter les lignes voulues pour tester localement # @baseUrl=http://localhost:31976 -@baseUrl=https://affiliations-tools.services.inist.fr +@baseUrl=https://affiliations-tools.services.istex.fr -## Résolution de nom de ville par Netscity +### +# @name v1NetscityExpand +# Résolution de nom de ville par Netscity POST {{baseUrl}}/v1/netscity/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -16,8 +18,9 @@ { "value": "VILLEURBANNE"}, { "value": "NANCY"} ] -### +### +# @name v1Expand # Structurer une affiliation au format texte POST {{baseUrl}}/v1/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -33,8 +36,9 @@ { "value": "Ford, J (reprint author), Univ British Columbia, Dept Phys & Astron, 6224 Agr Rd, Vancouver, BC V6T 1Z1, Canada."}, { "value": "Laigle, C (reprint author), Univ Paris 06, Sorbonne Univ, 98b Bd Arago, F-75014 Paris, France.; Laigle, C (reprint author), CNRS, UMR 7095, IAP, 98b Bd Arago, F-75014 Paris, France."} ] -### +### +# @name v1RnsrJson # Trouver le(s) identifiant(s) RNSR pour chaque adresse (format LODEX) POST {{baseUrl}}/v1/rnsr/json?indent=true HTTP/1.1 Content-Type: application/json @@ -48,9 +52,9 @@ { "id":6, "value": { "address": "Intemporel" } }, { "id":7, "value": { "address": "Inist-CNRS, UPS76, 2 rue Jean Zay, Vandoeuvre-lès-Nancy" } } ] -### -# @name info +### +# @name v1RnsrInfo # Trouver les informations du RNSR pour chaque adresse (format LODEX) POST {{baseUrl}}/v1/rnsr/info?indent=true HTTP/1.1 Content-Type: application/json @@ -63,8 +67,9 @@ { "id":6, "value": { "address": "Intemporel" } }, { "id":7, "value": { "address": "Inist-CNRS, UPS76, 2 rue Jean Zay, Vandoeuvre-lès-Nancy" } } ] -### +### +# @name v1RnsrCsv # Trouver le(s) identifiant(s) RNSR pour chaque année de publication / adresse (format CSV) POST {{baseUrl}}/v1/rnsr/csv HTTP/1.1 Content-Type: text/csv @@ -74,8 +79,9 @@ 2015,IRD UMR AMAP MONTPELLIER FRA 2015,"University of Bordeaux, IMS, CNRS UMR5218, Talence, F-33405, France" 2015,"CENBG, CNRS/IN2P3, Chemin du Solarium B. P. 120, Gradignan, F-33175, France" -### +### +# @name v1RnsrConditor # Trouver le(s) identifiant(s) RNSR pour chaque affiliation de chaque notice Conditor. POST {{baseUrl}}/v1/rnsr/conditor HTTP/1.1 Content-Type: application/json @@ -88,8 +94,9 @@ }] }] }] -### +### +# @name v1AddressesParse POST {{baseUrl}}/v1/addresses/parse?indent=true HTTP/1.1 Content-Type: application/json diff --git a/affiliations-tools/swagger.json b/affiliations-tools/swagger.json index 9e9adac..c5e303e 100644 --- a/affiliations-tools/swagger.json +++ b/affiliations-tools/swagger.json @@ -14,7 +14,7 @@ "x-comment": "Will be automatically completed by the ezs server." }, { - "url": "http://vptdmservices.intra.inist.fr:49234/", + "url": "http://vptdmservices.intra.inist.fr:49207/", "description": "Latest version for production", "x-profil": "Standard" }, @@ -31,20 +31,22 @@ "description": "Plus de documentation", "url": "https://gitbucket.inist.fr/tdm/web-services/tree/master/affiliations-tools" } - }, { - "name": "rnsr", - "description": "RNSR", - "externalDocs": { - "description": "Plus de documentation", - "url": "https://gitbucket.inist.fr/tdm/web-services/tree/master/affiliations-tools#v1%2frnsr%2fcsv" - } - }, { - "name": "adresses", - "description": "Adresses", - "externalDocs": { - "description": "Plus de documentation", - "url": "https://gitbucket.inist.fr/tdm/web-services/tree/master/affiliations-tools#v1%2faddresses%2fparse" - } + }, + { + "name": "rnsr", + "description": "RNSR", + "externalDocs": { + "description": "Plus de documentation", + "url": "https://gitbucket.inist.fr/tdm/web-services/tree/master/affiliations-tools#v1%2frnsr%2fcsv" + } + }, + { + "name": "adresses", + "description": "Adresses", + "externalDocs": { + "description": "Plus de documentation", + "url": "https://gitbucket.inist.fr/tdm/web-services/tree/master/affiliations-tools#v1%2faddresses%2fparse" + } } ], "components": { @@ -198,4 +200,4 @@ } } } -} +} \ No newline at end of file diff --git a/affiliations-tools/tests.hurl b/affiliations-tools/tests.hurl new file mode 100644 index 0000000..e21845a --- /dev/null +++ b/affiliations-tools/tests.hurl @@ -0,0 +1,507 @@ +POST https://affiliations-tools.services.istex.fr/v1/netscity/expand?indent=true +content-type: application/json +[ + { "value": "VANDOEUVRE" }, + { "value": "SACLAY"}, + { "value": "ORSAY"}, + { "value": "TOULOUSE"}, + { "value": "VILLEURBANNE"}, + { "value": "NANCY"} +] + + + +POST https://affiliations-tools.services.istex.fr/v1/expand?indent=true +content-type: application/json +[ + { "value": "Baran, N (reprint author), Univ Zagreb, Dept Phys, Bijenieka Cesta 32, Zagreb 10000, Croatia."}, + { "value": "Harikane, Y (reprint author), Univ Tokyo, Inst Cosm Ray Res, 5-1-5 Kashiwanoha, Kashiwa, Chiba 2778582, Japan.; Harikane, Y (reprint author), Univ Tokyo, Grad Sch Sci, Dept Phys, Bunkyo Ku, 7-3-1 Hongo, Tokyo 1130033, Japan."}, + { "value": "Davidzon, I (reprint author), Aix Marseille Univ, LAM, CNRS, UMR 7326, F-13388 Marseille, France.; Davidzon, I (reprint author), INAF Osservatorio Astron Bologna, Via Ranzani 1, I-40127 Bologna, Italy."}, + { "value": "Zolotukhin, I (reprint author), IRAP, CNRS, 9 Ave Colonel Roche,BP 44346, F-31028 Toulouse 4, France.; Zolotukhin, I (reprint author), Moscow MV Lomonosov State Univ, Sternberg Astron Inst, Univ Skij Pr 13, Moscow 119992, Russia."}, + { "value": "Cooke, J (reprint author), Swinburne Univ Technol, Ctr Astrophys & Supercomp, Hawthorn, Vic 3122, Australia."}, + { "value": "van Uitert, E (reprint author), Argelander Inst Astron, Hugel 71, D-53121 Bonn, Germany."}, + { "value": "Harnois-Deraps, J (reprint author), Univ British Columbia, Dept Phys & Astron, Vancouver, BC V6T 1Z1, Canada."}, + { "value": "Ford, J (reprint author), Univ British Columbia, Dept Phys & Astron, 6224 Agr Rd, Vancouver, BC V6T 1Z1, Canada."}, + { "value": "Laigle, C (reprint author), Univ Paris 06, Sorbonne Univ, 98b Bd Arago, F-75014 Paris, France.; Laigle, C (reprint author), CNRS, UMR 7095, IAP, 98b Bd Arago, F-75014 Paris, France."} +] + +HTTP 200 +[{ + "value": { + "house": "baran n reprint author univ zagreb dept phys bijenieka", + "road": "cesta", + "house_number": "32", + "city": "zagreb", + "postcode": "10000", + "country": "n/a", + "id": "Baran, N (reprint author), Univ Zagreb, Dept Phys, Bijenieka Cesta 32, Zagreb 10000, Croatia." + } +}, +{ + "value": { + "house": "harikane y reprint author univ tokyo grad sch sci dept phys", + "house_number": "5-1-5", + "road": "kashiwanoha", + "city": "tokyo", + "state": "chiba", + "postcode": "1130033", + "country": "n/a", + "city_district": "hongo", + "id": "Harikane, Y (reprint author), Univ Tokyo, Inst Cosm Ray Res, 5-1-5 Kashiwanoha, Kashiwa, Chiba 2778582, Japan.; Harikane, Y (reprint author), Univ Tokyo, Grad Sch Sci, Dept Phys, Bunkyo Ku, 7-3-1 Hongo, Tokyo 1130033, Japan." + } +}, +{ + "value": { + "house": "france. davidzon i reprint author inaf osservatorio astron bologna", + "house_number": "1", + "postcode": "i-40127", + "city": "bologna", + "road": "via ranzani", + "country": "n/a", + "id": "Davidzon, I (reprint author), Aix Marseille Univ, LAM, CNRS, UMR 7326, F-13388 Marseille, France.; Davidzon, I (reprint author), INAF Osservatorio Astron Bologna, Via Ranzani 1, I-40127 Bologna, Italy." + } +}, +{ + "value": { + "house": "france. zolotukhin i reprint author moscow mv lomonosov state univ sternberg astron inst univ skij", + "house_number": "9", + "road": "pr 13", + "po_box": "bp 44346", + "postcode": "119992", + "city": "moscow", + "country": { + "cartographyCode": "RUS", + "about": "http://data.loterre.fr/ark:/67375/9SD-MTZLFXTZ-X", + "prefLabel@fr": "Russie", + "prefLabel@en": "Russia", + "wikidataURI": "https://www.wikidata.org/wiki/Q649", + "geonameURI": "https://www.geonames.org/2017370", + "countryCode": "RU", + "latitude": "61.6925647074082", + "longitude": "99.2165267869251", + "localization@en": [], + "localization@fr": [] + }, + "id": "Zolotukhin, I (reprint author), IRAP, CNRS, 9 Ave Colonel Roche,BP 44346, F-31028 Toulouse 4, France.; Zolotukhin, I (reprint author), Moscow MV Lomonosov State Univ, Sternberg Astron Inst, Univ Skij Pr 13, Moscow 119992, Russia." + } +}, +{ + "value": { + "house": "cooke j reprint author swinburne univ technol ctr astrophys & supercomp", + "suburb": "hawthorn", + "state": "vic", + "postcode": "3122", + "country": { + "cartographyCode": "AUS", + "about": "http://data.loterre.fr/ark:/67375/9SD-VFP5KTPK-R", + "prefLabel@fr": "Australie", + "prefLabel@en": "Australia", + "wikidataURI": "https://www.wikidata.org/wiki/Q3114", + "geonameURI": "https://www.geonames.org/2077456", + "countryCode": "AU", + "latitude": "-25.5607640622395", + "longitude": "134.376078573618", + "localization@en": [], + "localization@fr": [] + }, + "id": "Cooke, J (reprint author), Swinburne Univ Technol, Ctr Astrophys & Supercomp, Hawthorn, Vic 3122, Australia." + } +}, +{ + "value": { + "house": "van uitert e reprint author argelander inst astron", + "road": "hugel", + "house_number": "71", + "postcode": "d-53121", + "city": "bonn", + "country": { + "cartographyCode": "DEU", + "about": "http://data.loterre.fr/ark:/67375/9SD-HM2MMZDZ-0", + "prefLabel@fr": "Allemagne", + "prefLabel@en": "Germany", + "wikidataURI": "https://www.wikidata.org/wiki/Q64", + "geonameURI": "https://www.geonames.org/2921044", + "countryCode": "DE", + "latitude": "51.1337226904078", + "longitude": "10.2884850927429", + "localization@en": [], + "localization@fr": [] + }, + "id": "van Uitert, E (reprint author), Argelander Inst Astron, Hugel 71, D-53121 Bonn, Germany." + } +}, +{ + "value": { + "house": "harnois-deraps j reprint author univ british columbia dept phys & astron", + "city": "vancouver", + "state": "bc", + "postcode": "v6t 1z1", + "country": { + "cartographyCode": "CAN", + "about": "http://data.loterre.fr/ark:/67375/9SD-QDWJ08N6-7", + "prefLabel@fr": "Canada", + "prefLabel@en": "Canada", + "wikidataURI": "https://www.wikidata.org/wiki/Q1930", + "geonameURI": "https://www.geonames.org/6251999", + "countryCode": "CA", + "latitude": "57.7487688035733", + "longitude": "-101.569822125212", + "localization@en": [], + "localization@fr": [] + }, + "id": "Harnois-Deraps, J (reprint author), Univ British Columbia, Dept Phys & Astron, Vancouver, BC V6T 1Z1, Canada." + } +}, +{ + "value": { + "house": "ford j reprint author univ british columbia dept phys & astron", + "house_number": "6224", + "road": "agr rd", + "city": "vancouver", + "state": "bc", + "postcode": "v6t 1z1", + "country": { + "cartographyCode": "CAN", + "about": "http://data.loterre.fr/ark:/67375/9SD-QDWJ08N6-7", + "prefLabel@fr": "Canada", + "prefLabel@en": "Canada", + "wikidataURI": "https://www.wikidata.org/wiki/Q1930", + "geonameURI": "https://www.geonames.org/6251999", + "countryCode": "CA", + "latitude": "57.7487688035733", + "longitude": "-101.569822125212", + "localization@en": [], + "localization@fr": [] + }, + "id": "Ford, J (reprint author), Univ British Columbia, Dept Phys & Astron, 6224 Agr Rd, Vancouver, BC V6T 1Z1, Canada." + } +}, +{ + "value": { + "house": "france. laigle c reprint author cnrs umr 7095", + "house_number": "98b", + "road": "bd arago", + "postcode": "f-75014", + "city": "paris", + "country": { + "cartographyCode": "FRA", + "about": "http://data.loterre.fr/ark:/67375/9SD-WNLFZ7TZ-K", + "prefLabel@fr": "France", + "prefLabel@en": "France", + "wikidataURI": "https://www.wikidata.org/wiki/Q90", + "geonameURI": "https://www.geonames.org/3017382", + "countryCode": "FR", + "latitude": "46.6064633728632", + "longitude": "2.33908864602935", + "localization@en": [], + "localization@fr": [] + }, + "id": "Laigle, C (reprint author), Univ Paris 06, Sorbonne Univ, 98b Bd Arago, F-75014 Paris, France.; Laigle, C (reprint author), CNRS, UMR 7095, IAP, 98b Bd Arago, F-75014 Paris, France." + } +}] + +POST https://affiliations-tools.services.istex.fr/v1/rnsr/json?indent=true +content-type: application/json +[ + { "id":1, "value": { "year": "2021", "address": "CNRS UMR AMAP MONTPELLIER FRA" } }, + { "id":2, "value": { "year": "2021", "address": "IRD UMR AMAP MONTPELLIER FRA" } }, + { "id":3, "value": { "year": "2021", "address": "University of Bordeaux, IMS, CNRS UMR5218, Talence, F-33405, France" } }, + { "id":4, "value": { "year": "2021", "address": "CENBG, CNRS/IN2P3, Chemin du Solarium B. P. 120, Gradignan, F-33175, France" } }, + { "id":5, "value": { "year": "2021", "address": "Nulle part" } }, + { "id":6, "value": { "address": "Intemporel" } }, + { "id":7, "value": { "address": "Inist-CNRS, UPS76, 2 rue Jean Zay, Vandoeuvre-lès-Nancy" } } +] + +HTTP 200 +[{ + "id": 1, + "value": [ + "200317641S" + ] +}, +{ + "id": 2, + "value": [ + "200317641S" + ] +}, +{ + "id": 3, + "value": [ + "200711887V" + ] +}, +{ + "id": 4, + "value": [] +}, +{ + "id": 5, + "value": [] +}, +{ + "id": 6, + "value": [] +}, +{ + "id": 7, + "value": [ + "198822446E" + ] +}] + +POST https://affiliations-tools.services.istex.fr/v1/rnsr/info?indent=true +content-type: application/json +[ + { "id":1, "value": { "year": "2021", "address": "CNRS UMR AMAP MONTPELLIER FRA" } }, + { "id":3, "value": { "year": "2021", "address": "University of Bordeaux, IMS, CNRS UMR5218, Talence, F-33405, France" } }, + { "id":4, "value": { "year": "2021", "address": "CENBG, CNRS/IN2P3, Chemin du Solarium B. P. 120, Gradignan, F-33175, France" } }, + { "id":5, "value": { "year": "2021", "address": "Nulle part" } }, + { "id":6, "value": { "address": "Intemporel" } }, + { "id":7, "value": { "address": "Inist-CNRS, UPS76, 2 rue Jean Zay, Vandoeuvre-lès-Nancy" } } +] + +HTTP 200 +[{ + "id": 1, + "value": [ + { + "num_nat_struct": "200317641S", + "intitule": "botAnique et Modélisation de l'Architecture des Plantes et des végétations", + "sigle": "AMAP", + "ville_postale": "MONTPELLIER CEDEX 5", + "code_postal": "34398", + "etabAssoc": [ + { + "etab": { + "sigle": "CNRS", + "libelle": "Centre national de la recherche scientifique", + "sigleAppauvri": "cnrs", + "libelleAppauvri": "centre national de la recherche scientifique" + }, + "label": "UMR", + "labelAppauvri": "umr", + "numero": "5120" + }, + { + "etab": { + "sigle": "IRD", + "libelle": "Institut de recherche pour le developpement", + "sigleAppauvri": "ird", + "libelleAppauvri": "institut de recherche pour le developpement" + }, + "label": "UMR", + "labelAppauvri": "umr", + "numero": "5120" + }, + { + "etab": { + "sigle": "CIRAD", + "libelle": "Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement", + "sigleAppauvri": "cirad", + "libelleAppauvri": "centre de cooperation internationale en recherche agronomique pour le developpement" + }, + "label": "UMR", + "labelAppauvri": "umr", + "numero": "51" + }, + { + "etab": { + "sigle": "MONTPELLIER", + "libelle": "Université de Montpellier (EPE)", + "sigleAppauvri": "montpellier", + "libelleAppauvri": "universite de montpellier (epe)" + }, + "label": "UMR", + "labelAppauvri": "umr", + "numero": "5120" + }, + { + "etab": { + "sigle": "INRAE", + "libelle": "Institut national de recherche pour l'agriculture, l'alimentation et l'environnement", + "sigleAppauvri": "inrae", + "libelleAppauvri": "institut national de recherche pour l agriculture, l alimentation et l environnement" + }, + "label": "UMR", + "labelAppauvri": "umr", + "numero": "0931" + } + ], + "intituleAppauvri": "botanique et modelisation de l architecture des plantes et des vegetations", + "sigleAppauvri": "amap", + "ville_postale_appauvrie": "montpellier cedex 5", + "annee_creation": "2001", + "an_fermeture": "" + } + ] +}, +{ + "id": 3, + "value": [ + { + "num_nat_struct": "200711887V", + "intitule": "LABORATOIRE D'INTEGRATION DU MATERIAU AU SYSTEME", + "sigle": "IMS", + "ville_postale": "TALENCE CEDEX", + "code_postal": "33405", + "etabAssoc": [ + { + "etab": { + "sigle": "CNRS", + "libelle": "Centre national de la recherche scientifique", + "sigleAppauvri": "cnrs", + "libelleAppauvri": "centre national de la recherche scientifique" + }, + "label": "UMR", + "labelAppauvri": "umr", + "numero": "5218" + }, + { + "etab": { + "sigle": "BORDEAUX", + "libelle": "Université de Bordeaux", + "sigleAppauvri": "bordeaux", + "libelleAppauvri": "universite de bordeaux" + }, + "label": "UMR", + "labelAppauvri": "umr", + "numero": "5218" + }, + { + "etab": { + "sigle": "Bordeaux INP", + "libelle": "Institut Polytechnique Bordeaux", + "sigleAppauvri": "bordeaux inp", + "libelleAppauvri": "institut polytechnique bordeaux" + }, + "label": "UMR", + "labelAppauvri": "umr", + "numero": "5218" + } + ], + "intituleAppauvri": "laboratoire d integration du materiau au systeme", + "sigleAppauvri": "ims", + "ville_postale_appauvrie": "talence cedex", + "annee_creation": "2006", + "an_fermeture": "" + } + ] +}, +{ + "id": 4, + "value": [] +}, +{ + "id": 5, + "value": [] +}, +{ + "id": 6, + "value": [] +}, +{ + "id": 7, + "value": [ + { + "num_nat_struct": "198822446E", + "intitule": "Institut de l'information scientifique et technique", + "sigle": "INIST", + "ville_postale": "VANDOEUVRE LES NANCY CEDEX", + "code_postal": "54519", + "etabAssoc": [ + { + "etab": { + "sigle": "CNRS", + "libelle": "Centre national de la recherche scientifique", + "sigleAppauvri": "cnrs", + "libelleAppauvri": "centre national de la recherche scientifique" + }, + "label": "UAR", + "labelAppauvri": "uar", + "numero": "76" + } + ], + "intituleAppauvri": "institut de l information scientifique et technique", + "sigleAppauvri": "inist", + "ville_postale_appauvrie": "vandoeuvre les nancy cedex", + "annee_creation": "1988", + "an_fermeture": "" + } + ] +}] + +POST https://affiliations-tools.services.istex.fr/v1/rnsr/csv +content-type: text/csv +``` +Année,Adresse +2015,CNRS UMR AMAP MONTPELLIER FRA +2015,IRD UMR AMAP MONTPELLIER FRA +2015,"University of Bordeaux, IMS, CNRS UMR5218, Talence, F-33405, France" +2015,"CENBG, CNRS/IN2P3, Chemin du Solarium B. P. 120, Gradignan, F-33175, France" +``` + +HTTP 200 +``` +Année;Adresse;RNSR +2015;CNRS UMR AMAP MONTPELLIER FRA;200317641S +2015;IRD UMR AMAP MONTPELLIER FRA;200317641S +2015;University of Bordeaux, IMS, CNRS UMR5218, Talence, F-33405, France;200711887V +2015;CENBG, CNRS/IN2P3, Chemin du Solarium B. P. 120, Gradignan, F-33175, France; +``` + + + +POST https://affiliations-tools.services.istex.fr/v1/rnsr/conditor +content-type: application/json +[{ + "xPublicationDate": ["2012-01-01"], + "authors": [{ + "affiliations": [{ + "address": "GDR 2989 Université Versailles Saint-Quentin-en-Yvelines, 63009" + }] + }] +}] + +HTTP 200 +[{ + "xPublicationDate": [ + "2012-01-01" + ], + "authors": [ + { + "affiliations": [ + { + "address": "GDR 2989 Université Versailles Saint-Quentin-en-Yvelines, 63009", + "conditorRnsr": [ + "200619958X" + ] + } + ] + } + ] +}] + +POST https://affiliations-tools.services.istex.fr/v1/addresses/parse?indent=true +content-type: application/json +[ + { + "value": "Barboncino 781 Franklin Ave, Crown Heights, Brooklyn, NY 11238" + } +] + +HTTP 200 +[{ + "value": { + "id": "Barboncino 781 Franklin Ave, Crown Heights, Brooklyn, NY 11238", + "value": { + "house": "barboncino", + "house_number": "781", + "road": "franklin ave", + "suburb": "crown heights", + "city_district": "brooklyn", + "state": "ny", + "postcode": "11238" + } + } +}] diff --git a/ark-tools/examples.http b/ark-tools/examples.http index d41df44..18484ff 100644 --- a/ark-tools/examples.http +++ b/ark-tools/examples.http @@ -1,7 +1,10 @@ # These examples can be used directly in VSCode, using REST Client extension (humao.rest-client) +# ⚠ L'utilisation de ce fichier générera le stockage inutile d'identifiants ARK dans la base. +# C'est pourquoi il est déconseillé d'exécuter ces exemples. + # Attribution d'ARK aux objets d'une série -POST https://ark-tools.services.inist.fr/v1/67375/stamp?subpublisher=XXX&indent=true HTTP/1.1 +POST https://ark-tools.services.istex.fr/v1/67375/stamp?subpublisher=XXX&indent=true HTTP/1.1 Content-Type: application/json [ @@ -13,7 +16,7 @@ # Attribution d'ARK aux objets d'une série -POST https://ark-tools.services.inist.fr/v1/67375/stamp?subpublisher=XXX&indent=true HTTP/1.1 +POST https://ark-tools.services.istex.fr/v1/67375/stamp?subpublisher=XXX&indent=true HTTP/1.1 Content-Type: application/json [ diff --git a/authors-tools/examples.http b/authors-tools/examples.http index a08c3e2..9612189 100644 --- a/authors-tools/examples.http +++ b/authors-tools/examples.http @@ -1,9 +1,13 @@ +# Ces exemples peuvent être exécutés directement dans VSCode, en utilisant l'extension REST Client (humao.rest-client) + +# Décommenter/commenter les lignes voulues pour tester localement +# @baseUrl=http://localhost:31976 # VP -@baseUrl = https://authors-tools.services.inist.fr +@baseUrl = https://authors-tools.services.istex.fr # VI -# @baseUrl = http://name-gender-1.tdmservices.intra.inist.fr +# @baseUrl = http://name-gender-1.tdmservices.intra.istex.fr - +### # @name v1OrcidDisambiguation # Désambiguisation d'auteur orcid POST {{baseUrl}}/v1/orcid-disambiguation/orcidDisambiguation?indent=true HTTP/1.1 @@ -16,9 +20,9 @@ } ] -### -# @name v1NameGender +### +# @name v1FirstNameGender # Détection du genre d'un prénom POST {{baseUrl}}/v1/first-name/gender?indent=true HTTP/1.1 Content-Type: application/json @@ -30,7 +34,8 @@ {"id": "4", "value": "James A."} ] -# @name v1PrivatePublic +### +# @name v1CorporatePrivatePublic # Détection d'affiliation privé POST {{baseUrl}}/v1/corporate/private-public?indent=true HTTP/1.1 Content-Type: application/json @@ -40,4 +45,6 @@ {"id": "2", "value": "AiryLab SARL, 34 Rue Jean Baptiste Malon, F-04800 Greoux Les Bains, France"}, {"id": "3", "value": "4G TECHNOL, F-06370 Mouans Sartoux, France"}, {"id": "4", "value": "Univ Cote dAzur, INRIA, Ansys, Nice, France"} -] \ No newline at end of file +] + +### \ No newline at end of file diff --git a/authors-tools/tests.hurl b/authors-tools/tests.hurl new file mode 100644 index 0000000..db58da0 --- /dev/null +++ b/authors-tools/tests.hurl @@ -0,0 +1,68 @@ +POST https://authors-tools.services.istex.fr/v1/orcid-disambiguation/orcidDisambiguation?indent=true +content-type: application/json +[ + { + "id":"1", + "value":[{"firstName" : "Rubén", "lastName" : "Vázquez-Cárdenas", "coAuthors" : ["Juan pablo Martínez-Pastor"]}] + } +] + +HTTP 200 +[{ + "id": "1", + "value": "0000-0002-8416-869X" +}] + +POST https://authors-tools.services.istex.fr/v1/first-name/gender?indent=true +content-type: application/json +[ + {"id": "1", "value": "Jean Christophe"}, + {"id": "2", "value": "Amke"}, + {"id": "3", "value": "Seong-Eun"}, + {"id": "4", "value": "James A."} +] + +HTTP 200 +[{ + "id": "1", + "value": "male" +}, +{ + "id": "2", + "value": "mostly_female" +}, +{ + "id": "3", + "value": "female" +}, +{ + "id": "4", + "value": "male" +}] + +POST https://authors-tools.services.istex.fr/v1/corporate/private-public?indent=true +content-type: application/json +[ + {"id": "1", "value": "Abeeway, F-06903 Sophia Antipolis, France"}, + {"id": "2", "value": "AiryLab SARL, 34 Rue Jean Baptiste Malon, F-04800 Greoux Les Bains, France"}, + {"id": "3", "value": "4G TECHNOL, F-06370 Mouans Sartoux, France"}, + {"id": "4", "value": "Univ Cote dAzur, INRIA, Ansys, Nice, France"} +] + +HTTP 200 +[{ + "id": "1", + "value": "organisme: abeeway, statut: private" +}, +{ + "id": "2", + "value": "organisme: airylab sarl, statut: private" +}, +{ + "id": "3", + "value": "organisme: 4g technol, statut: Informations manquantes" +}, +{ + "id": "4", + "value": "organisme: univ cote dazur, statut: public" +}] diff --git a/base-line/examples.http b/base-line/examples.http index c3ada2d..b60da00 100644 --- a/base-line/examples.http +++ b/base-line/examples.http @@ -1,65 +1,53 @@ # These examples can be used directly in VSCode, using REST Client extension (humao.rest-client) +### +# @name v1EchoJson # Parse un flux JSON, et le returne sans modification -POST https://base-line.services.inist.fr/v1/echo/json?indent=true HTTP/1.1 +POST https://base-line.services.istex.fr/v1/echo/json?indent=true HTTP/1.1 Content-Type: application/json [ { "id":"12345","value": "A" }, { "id":"6789","value": "B" } ] + ### - - - - +# @name v1EchoCsv # Parse un flux CSV, et le retourne sans modification -POST https://base-line.services.inist.fr/v1/echo/csv HTTP/1.1 +POST https://base-line.services.istex.fr/v1/echo/csv HTTP/1.1 Content-Type: text/csv id,value 12345,A 6789,B + ### - - - - - +# @name v1EchoRaw # Reçoit un flux, et le retourne sans modification et sans analsye -POST https://base-line.services.inist.fr/v1/echo/raw HTTP/1.1 +POST https://base-line.services.istex.fr/v1/echo/raw HTTP/1.1 Content-Type: text/plain OK + ### - - - - +# @name v1TrueJson # Parse un flux JSON, et donne la valeur true au champ value -POST https://base-line.services.inist.fr/v1/true/json?indent=true HTTP/1.1 +POST https://base-line.services.istex.fr/v1/true/json?indent=true HTTP/1.1 Content-Type: application/json [ { "id":"12345","value": "A" }, { "id":"6789","value": "B" } ] + ### - - - - +# @name v1TrueCsv # Parse un flux CSV, et donne la valeur true au champ value -POST https://base-line.services.inist.fr/v1/true/csv HTTP/1.1 +POST https://base-line.services.istex.fr/v1/true/csv HTTP/1.1 Content-Type: text/csv id,value 12345,A 6789,B + ### - - - - - - diff --git a/base-line/tests.hurl b/base-line/tests.hurl new file mode 100644 index 0000000..23c0a07 --- /dev/null +++ b/base-line/tests.hurl @@ -0,0 +1,78 @@ +POST https://base-line.services.istex.fr/v1/echo/json?indent=true +content-type: application/json +[ + { "id":"12345","value": "A" }, + { "id":"6789","value": "B" } +] + +HTTP 200 +[{ + "id": "12345", + "value": "A" +}, +{ + "id": "6789", + "value": "B" +}] + +POST https://base-line.services.istex.fr/v1/echo/csv +content-type: text/csv +``` +id,value +12345,A +6789,B +``` + +HTTP 200 +``` +id;value +12345;A +6789;B +``` + + + +POST https://base-line.services.istex.fr/v1/echo/raw +content-type: text/plain +``` +OK +``` + +HTTP 200 +``` +OK +``` + + + +POST https://base-line.services.istex.fr/v1/true/json?indent=true +content-type: application/json +[ + { "id":"12345","value": "A" }, + { "id":"6789","value": "B" } +] + +HTTP 200 +[{ + "id": "12345", + "value": true +}, +{ + "id": "6789", + "value": true +}] + +POST https://base-line.services.istex.fr/v1/true/csv +content-type: text/csv +``` +id,value +12345,A +6789,B +``` + +HTTP 200 +``` +id;value +12345;true +6789;true +``` diff --git a/biblio-tools/examples.http b/biblio-tools/examples.http index aae23cb..40a742e 100644 --- a/biblio-tools/examples.http +++ b/biblio-tools/examples.http @@ -1,7 +1,9 @@ # To test locally, replace with @baseUrl = http://localhost:31976 -#@baseUrl = https://biblio-tools.services.inist.fr +#@baseUrl = https://biblio-tools.services.istex.fr +### +# @name v1UnpaywallIsOa # unpaywall/is_oa POST {{baseUrl}}/v1/unpaywall/is_oa?indent=true HTTP/1.1 Content-Type: application/json @@ -15,10 +17,9 @@ { "id":6, "value": "10.4000/edc.9014"}, { "id":7, "value": "unknown"} ] + ### - - - +# @name v1UnpaywallExpand # unpaywall/expand POST {{baseUrl}}/v1/unpaywall/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -32,8 +33,9 @@ { "id":6, "value": "10.4000/edc.9014"}, { "id":7, "value": "unknown"} ] -### +### +# @name v1UnpaywallCorhal # unpaywall/corhal POST {{baseUrl}}/v1/unpaywall/corhal?indent=true HTTP/1.1 Content-Type: application/json @@ -47,8 +49,9 @@ { "id":6, "value": "10.4000/edc.9014"}, { "id":7, "value": "unknown"} ] -### +### +# @name v1UnpaywallWorksExpand # unpaywall/works/expand POST {{baseUrl}}/v1/unpaywall/works/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -62,8 +65,9 @@ { "id":6, "value": "10.4000/edc.9014"}, { "id":7, "value": "unknown"} ] -### +### +# @name v1CrossrefPrefixesExpand # crossref/prefixes/1 POST {{baseUrl}}/v1/crossref/prefixes/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -76,10 +80,9 @@ { "id":5, "value": "10.1037"}, { "id":6, "value": "unknown"} ] + ### - - - +# @name v1CrossrefWorksExpand2 # crossref/works/2 POST {{baseUrl}}/v1/crossref/works/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -93,8 +96,9 @@ { "id":6, "value": "10.4000/edc.9014"}, { "id":7, "value": "unknown"} ] -### +### +# @name v1InspirehepWorksExpand # inspirehep/works/expand POST {{baseUrl}}/v1/inspirehep/works/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -109,8 +113,9 @@ { "id":7, "value": "10.4000/edc.9014"}, { "id":8, "value": "unknown"} ] -### +### +# @name v1OpenalexWorksExpand # openalex/works/expand POST {{baseUrl}}/v1/openalex/works/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -125,8 +130,9 @@ { "id":7, "value": "10.4000/edc.9014"}, { "id":8, "value": "unknown"} ] -### +### +# @name v1IstexWorksExpand # istex/works/expand POST {{baseUrl}}/v1/istex/works/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -137,8 +143,9 @@ { "id":3, "value": "10.1093/ageing/afm016"}, { "id":4, "value": ""} ] -### +### +# @name v1WosFetch # wos/fecth POST {{baseUrl}}/v1/wos/fetch?indent=true HTTP/1.1 Content-Type: application/json @@ -167,8 +174,9 @@ } } ] -### +### +# @name v1WosWorksExpand # wos/works/expand POST {{baseUrl}}/v1/wos/works/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -179,8 +187,9 @@ { "id":3, "value": "10.1093/ageing/afm016"}, { "id":4, "value": ""} ] -### +### +# @name v1HalWorksExpand # hal/works/expand POST {{baseUrl}}/v1/hal/works/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -191,9 +200,9 @@ { "id":3, "value": "10.3324/haematol.2016.148908"}, { "id":4, "value": ""} ] + ### - - +# @name v1ConditorWorksExpand # conditor/works/expand POST {{baseUrl}}/v1/conditor/works/expand?indent=true HTTP/1.1 Content-Type: application/json @@ -204,4 +213,5 @@ { "id":3, "value": "10.3324/haematol.2016.148908"}, { "id":4, "value": ""} ] + ### diff --git a/biblio-tools/tests.hurl b/biblio-tools/tests.hurl new file mode 100644 index 0000000..9b711a0 --- /dev/null +++ b/biblio-tools/tests.hurl @@ -0,0 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Karger AG", + "issue": "2", + "license": [ + { + "start": { + "date-parts": [ + [ + 2018, + 1, + 1 + ] + ], + "date-time": "2018-01-01T00:00:00Z", + "timestamp": 1514764800000 + }, + "content-version": "vor", + "delay-in-days": 0, + "URL": "https://www.karger.com/Services/SiteLicenses" + }, + { + "start": { + "date-parts": [ + [ + 2018, + 1, + 1 + ] + ], + "date-time": "2018-01-01T00:00:00Z", + "timestamp": 1514764800000 + }, + "content-version": "tdm", + "delay-in-days": 0, + "URL": "https://www.karger.com/Services/SiteLicenses" + } + ], + "content-domain/domain": [], + "content-domain/crossmark-restriction": false, + "short-container-title": [ + "Int Arch Allergy Immunol" + ], + "published-print/date-parts": [ + [ + 2018 + ] + ], + "abstract": "<b><i>Background:</i></b> English plantain (<i>Plantago lanceolata</i>) is an important weed pollen allergen source triggering allergic symptoms during summer. To elucidate genuine versus cross-reactive sensitization, we investigated IgE reactivity patterns and inhibition capacities of plantain-sensitized patients. <b><i>Methods:</i></b> Sera of 35 rhinoconjunctivitis patients from the north-east of France with positive skin prick tests (SPT) to <i>Plantago lanceolata</i> pollen were tested with clinically relevant allergen sources using ELISA, ImmunoCAP, and immunoblot inhibition. <b><i>Results:</i></b> The patients were multisensitized with additional reactivity to grass (94.3%), ash (74.3%), birch (71.4%), and mugwort (55.2%) pollen in SPT. Sensitization prevalence to allergen molecules was 34.3% (Pla l 1), 94.3% (Phl p 1/5), 60.0% (Ole e 1), 65.7% (Bet v 1), 37.1% (profilin), and 40.0% (CCD). In immunoblot, IgE reactivity to plantain pollen was inhibited with relevant pollen extracts and purified rPla l 1. Two sera did not reveal any IgE cross-reactivity, while reactivity to plantain was efficiently inhibited by grass pollen in the sera of 10 patients. The sera from 17 different patients could be inhibited by grass, birch, or ash pollen to varying degrees. Thus, only 37.1% of our patients demonstrated true plantain pollen sensitization, while 62.9% were solely positive due to IgE cross-reactive molecules from other clinically relevant pollen. <b><i>Conclusions:</i></b> Plantain pollen-sensitized patients are multi-reactors demonstrating varying and complex IgE-reactivity profiles. In vivo and in vitro tests using extracts are typically blurred due to the presence of homologous allergens or CCD in grass, birch, or ash pollen. So far, Pla l 1 represents the only indicative marker allergen for the diagnosis of genuine plantain pollen sensitization.", + "DOI": "10.1159/000490004", + "type": "journal-article", + "created/date-parts": [ + [ + 2018, + 6, + 22 + ] + ], + "created/date-time": "2018-06-22T21:01:19Z", + "created/timestamp": 1529701279000, + "page": "97-106", + "source": "Crossref", + "is-referenced-by-count": 4, + "title": [ + "Do <b><i>Plantago lanceolata</i></b> Skin Prick Test-Positive Patients Display IgE to Genuine Plantain Pollen Allergens? Investigation of Pollen Allergic Patients from the North-East of France" + ], + "prefix": "10.1159", + "volume": "177", + "author": [ + { + "given": "Teresa", + "family": "Stemeseder", + "sequence": "first", + "affiliation": [] + }, + { + "given": "Carine", + "family": "Metz-Favre", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "Frederic", + "family": "de Blay", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "Gabrielle", + "family": "Pauli", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "Gabriele", + "family": "Gadermaier", + "sequence": "additional", + "affiliation": [] + } + ], + "member": "127", + "published-online/date-parts": [ + [ + 2018, + 6, + 22 + ] + ], + "container-title": [ + "International Archives of Allergy and Immunology" + ], + "language": "en", + "link": [ + { + "URL": "https://www.karger.com/Article/Pdf/490004", + "content-type": "application/pdf", + "content-version": "vor", + "intended-application": "text-mining" + }, + { + "URL": "https://www.karger.com/Article/Pdf/490004", + "content-type": "unspecified", + "content-version": "vor", + "intended-application": "similarity-checking" + } + ], + "deposited/date-parts": [ + [ + 2022, + 6, + 21 + ] + ], + "deposited/date-time": "2022-06-21T09:54:09Z", + "deposited/timestamp": 1655805249000, + "score": 0, + "resource/primary/URL": "https://www.karger.com/Article/FullText/490004", + "issued/date-parts": [ + [ + 2018 + ] + ], + "references-count": 0, + "journal-issue/issue": "2", + "journal-issue/published-online/date-parts": [ + [ + 2018, + 9, + 19 + ] + ], + "journal-issue/published-print/date-parts": [ + [ + 2018, + 9, + 27 + ] + ], + "URL": "http://dx.doi.org/10.1159/000490004", + "archive": [ + "Portico" + ], + "relation/is-supplemented-by": [ + { + "id-type": "doi", + "id": "10.6084/m9.figshare.6652790", + "asserted-by": "subject" + } + ], + "ISSN": [ + "1018-2438", + "1423-0097" + ], + "issn-type": [ + { + "value": "1018-2438", + "type": "print" + }, + { + "value": "1423-0097", + "type": "electronic" + } + ], + "subject": [ + "Immunology", + "General Medicine", + "Immunology and Allergy" + ], + "published/date-parts": [ + [ + 2018 + ] + ] + } +}, +{ + "id": 4, + "value": { + "indexed/date-parts": [ + [ + 2023, + 9, + 14 + ] + ], + "indexed/date-time": "2023-09-14T19:43:30Z", + "indexed/timestamp": 1694720610787, + "reference-count": 35, + "publisher": "Elsevier BV", + "license": [ + { + "start": { + "date-parts": [ + [ + 2018, + 11, + 1 + ] + ], + "date-time": "2018-11-01T00:00:00Z", + "timestamp": 1541030400000 + }, + "content-version": "tdm", + "delay-in-days": 0, + "URL": "https://www.elsevier.com/tdm/userlicense/1.0/" + } + ], + "content-domain/domain": [ + "elsevier.com", + "sciencedirect.com" + ], + "content-domain/crossmark-restriction": true, + "short-container-title": [ + "Journal of Membrane Science" + ], + "published-print/date-parts": [ + [ + 2018, + 11 + ] + ], + "DOI": "10.1016/j.memsci.2018.08.024", + "type": "journal-article", + "created/date-parts": [ + [ + 2018, + 8, + 30 + ] + ], + "created/date-time": "2018-08-30T18:57:31Z", + "created/timestamp": 1535655451000, + "page": "346-366", + "update-policy": "http://dx.doi.org/10.1016/elsevier_cm_policy", + "source": "Crossref", + "is-referenced-by-count": 50, + "title": [ + "Optimization of multistage membrane gas separation processes. Example of application to CO2 capture from blast furnace gas" + ], + "prefix": "10.1016", + "volume": "566", + "author": [ + { + "given": "Álvaro A.", + "family": "Ramírez-Santos", + "sequence": "first", + "affiliation": [] + }, + { + "given": "M.", + "family": "Bozorg", + "sequence": "additional", + "affiliation": [] + }, + { + "ORCID": "http://orcid.org/0000-0003-4843-8709", + "authenticated-orcid": false, + "given": "B.", + "family": "Addis", + "sequence": "additional", + "affiliation": [] + }, + { + "ORCID": "http://orcid.org/0000-0002-3357-9608", + "authenticated-orcid": false, + "given": "V.", + "family": "Piccialli", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "C.", + "family": "Castel", + "sequence": "additional", + "affiliation": [] + }, + { + "ORCID": "http://orcid.org/0000-0003-4400-1921", + "authenticated-orcid": false, + "given": "E.", + "family": "Favre", + "sequence": "additional", + "affiliation": [] + } + ], + "member": "78", + "container-title": [ + "Journal of Membrane Science" + ], + "language": "en", + "link": [ + { + "URL": "https://api.elsevier.com/content/article/PII:S0376738818317824?httpAccept=text/xml", + "content-type": "text/xml", + "content-version": "vor", + "intended-application": "text-mining" + }, + { + "URL": "https://api.elsevier.com/content/article/PII:S0376738818317824?httpAccept=text/plain", + "content-type": "text/plain", + "content-version": "vor", + "intended-application": "text-mining" + } + ], + "deposited/date-parts": [ + [ + 2020, + 4, + 20 + ] + ], + "deposited/date-time": "2020-04-20T21:56:32Z", + "deposited/timestamp": 1587419792000, + "score": 0, + "resource/primary/URL": "https://linkinghub.elsevier.com/retrieve/pii/S0376738818317824", + "issued/date-parts": [ + [ + 2018, + 11 + ] + ], + "references-count": 35, + "alternative-id": [ + "S0376738818317824" + ], + "URL": "http://dx.doi.org/10.1016/j.memsci.2018.08.024", + "ISSN": [ + "0376-7388" + ], + "issn-type": [ + { + "value": "0376-7388", + "type": "print" + } + ], + "subject": [ + "Filtration and Separation", + "Physical and Theoretical Chemistry", + "General Materials Science", + "Biochemistry" + ], + "published/date-parts": [ + [ + 2018, + 11 + ] + ], + "assertion": [ + { + "value": "Elsevier", + "name": "publisher", + "label": "This article is maintained by" + }, + { + "value": "Optimization of multistage membrane gas separation processes. 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All rights reserved.", + "name": "copyright", + "label": "Copyright" + } + ] + } +}, +{ + "id": 5, + "value": { + "indexed/date-parts": [ + [ + 2023, + 9, + 16 + ] + ], + "indexed/date-time": "2023-09-16T07:07:13Z", + "indexed/timestamp": 1694848033009, + "reference-count": 43, + "publisher": "American Geophysical Union (AGU)", + "issue": "1", + "license": [ + { + "start": { + "date-parts": [ + [ + 2019, + 1, + 11 + ] + ], + "date-time": "2019-01-11T00:00:00Z", + "timestamp": 1547164800000 + }, + "content-version": "vor", + "delay-in-days": 0, + "URL": "http://creativecommons.org/licenses/by-nc-nd/4.0/" + } + ], + "funder": [ + { + "DOI": "10.13039/100011102", + "name": "Seventh Framework Programme", + "doi-asserted-by": "publisher", + "award": [ + "320839" + ] + }, + { + "DOI": "10.13039/501100005416", + "name": "Norges Forskningsråd", + "doi-asserted-by": "publisher", + "award": [ + "208028/F50" + ] + } + ], + "content-domain/domain": [ + "agupubs.onlinelibrary.wiley.com" + ], + "content-domain/crossmark-restriction": true, + "short-container-title": [ + "JGR Atmospheres" + ], + "published-print/date-parts": [ + [ + 2019, + 1, + 16 + ] + ], + "abstract": "AbstractTerrestrial gamma ray flashes (TGFs) are sub‐millisecond bursts of high energetic gamma radiation associated with intracloud flashes in thunderstorms. In this paper we use the simultaneity of lightning detections by World Wide Lightning Location Network to find TGFs in the Reuven Ramaty High Energy Solar Spectroscopic Imager (RHESSI) data that are too faint to be identified by standard search algorithms. A similar approach has been used in an earlier paper, but here we expand the data set to include all years of RHESSI + World Wide Lightning Location Network data and show that there is a population of observationally weak TGFs all the way down to 0.22 of the RHESSI detection threshold (three counts in the detector). One should note that the majority of these are “normal” TGFs that are produced further away from the subsatellite point (and experience a 1/r2 effect) or produced at higher latitudes with a lower tropoause and thus experience increased atmospheric attenuation. This supports the idea that the TGF production rate is higher than currently reported. 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Objective: we examined the association between intelligence test scores, obtained during the 1940s, and age at death in a group of 492 male twin pairs, members of the National Academy of Sciences - National Research Council Twins Registry of WWII veterans. Design: using self-report information collected in th 1960s, we xamined whether modifiable risk factors for mortality, such as use of tobacco and alcohol, cardiovascular disease, and body mass index altered the association between intelligence and longevity. Results: when each member of a twin pair was treated as an independent observation, higher intelligence test scores were associated with longer life span (P = 0.0002). Modifiable risk factors were associated with life span as expected. However, in co-twin control analyses in which one twin served as the control for the other twin, neither intelligence nor any modifiable risk factors showed a significant association with life span. 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However, few studies have investigated the risk of metabolic syndrome, a known predictor of cardiovascular disease, in patients treated without hematopoietic stem cell transplantation. We describe the overall and age-specific prevalence, and the risk factors for metabolic syndrome and its components in the L.E.A. (Leucémie de l'Enfant et de l'Adolescent) French cohort of childhood acute leukemia survivors treated without hematopoietic stem cell transplantation. The study included 650 adult patients (mean age at evaluation: 24.2 years; mean follow-up after leukemia diagnosis: 16.0 years). The prevalence of metabolic syndrome was 6.9% (95% CI 5.1-9.2). The age-specific cumulative prevalence at 20, 25, 30 and 35 years of age was 1.3%, 6.1%, 10.8% and 22.4%, respectively. The prevalence of decreased high-density lipoprotein cholesterol, increased triglycerides, increased fasting glucose, increased blood pressure and increased abdominal circumference was 26.8%, 11.7%, 5.8%, 36.7% and 16.7%, respectively. Risk factors significantly associated with metabolic syndrome in the multivariate analysis were male sex (OR 2.64; 95% CI 1.32-5.29), age at last evaluation (OR 1.10; 95% CI 1.04-1.17) and body mass index at diagnosis (OR 1.15; 95% CI 1.01-1.32). The cumulative steroid dose was not a significant risk factor. Irradiated and non-irradiated patients exhibited different patterns of metabolic abnormalities, with more frequent abdominal obesity in irradiated patients and more frequent hypertension in non-irradiated patients. Survivors of childhood acute leukemia are at risk of metabolic syndrome, even when treated without hematopoietic stem cell transplantation or central nervous system irradiation. 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However, few studies have investigated the risk of metabolic syndrome, a known predictor of cardiovascular disease, in patients treated without hematopoietic stem cell transplantation. We describe the overall and age-specific prevalence, and the risk factors for metabolic syndrome and its components in the L.E.A. (Leucémie de l'Enfant et de l'Adolescent) French cohort of childhood acute leukemia survivors treated without hematopoietic stem cell transplantation. The study included 650 adult patients (mean age at evaluation: 24.2 years; mean follow-up after leukemia diagnosis: 16.0 years). The prevalence of metabolic syndrome was 6.9% (95% CI 5.1-9.2). The age-specific cumulative prevalence at 20, 25, 30 and 35 years of age was 1.3%, 6.1%, 10.8% and 22.4%, respectively. The prevalence of decreased high-density lipoprotein cholesterol, increased triglycerides, increased fasting glucose, increased blood pressure and increased abdominal circumference was 26.8%, 11.7%, 5.8%, 36.7% and 16.7%, respectively. Risk factors significantly associated with metabolic syndrome in the multivariate analysis were male sex (OR 2.64; 95% CI 1.32-5.29), age at last evaluation (OR 1.10; 95% CI 1.04-1.17) and body mass index at diagnosis (OR 1.15; 95% CI 1.01-1.32). The cumulative steroid dose was not a significant risk factor. Irradiated and non-irradiated patients exhibited different patterns of metabolic abnormalities, with more frequent abdominal obesity in irradiated patients and more frequent hypertension in non-irradiated patients. Survivors of childhood acute leukemia are at risk of metabolic syndrome, even when treated without hematopoietic stem cell transplantation or central nervous system irradiation. A preventive approach with regular screening for cardiovascular risk factors is recommended. clinicaltrials.gov identifier:01756599. Copyright© Ferrata Storti Foundation.", + "abstract/en": "Cardiovascular conditions are serious long-term complications of childhood acute leukemia. However, few studies have investigated the risk of metabolic syndrome, a known predictor of cardiovascular disease, in patients treated without hematopoietic stem cell transplantation. We describe the overall and age-specific prevalence, and the risk factors for metabolic syndrome and its components in the L.E.A. (Leucémie de l'Enfant et de l'Adolescent) French cohort of childhood acute leukemia survivors treated without hematopoietic stem cell transplantation. The study included 650 adult patients (mean age at evaluation: 24.2 years; mean follow-up after leukemia diagnosis: 16.0 years). The prevalence of metabolic syndrome was 6.9% (95% CI 5.1-9.2). The age-specific cumulative prevalence at 20, 25, 30 and 35 years of age was 1.3%, 6.1%, 10.8% and 22.4%, respectively. The prevalence of decreased high-density lipoprotein cholesterol, increased triglycerides, increased fasting glucose, increased blood pressure and increased abdominal circumference was 26.8%, 11.7%, 5.8%, 36.7% and 16.7%, respectively. Risk factors significantly associated with metabolic syndrome in the multivariate analysis were male sex (OR 2.64; 95% CI 1.32-5.29), age at last evaluation (OR 1.10; 95% CI 1.04-1.17) and body mass index at diagnosis (OR 1.15; 95% CI 1.01-1.32). The cumulative steroid dose was not a significant risk factor. Irradiated and non-irradiated patients exhibited different patterns of metabolic abnormalities, with more frequent abdominal obesity in irradiated patients and more frequent hypertension in non-irradiated patients. 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b/bin/generate-example-tests.mjs @@ -0,0 +1,122 @@ +#!/usr/bin/env node + +import { RestParser, RestRequest } from "rest-cli"; + +const usage = (errorNumber = 0) => { + console.error("Usage: ./bin/generate-test.mjs [requestName|requestNumber]"); + process.exit(errorNumber); +} + +/** @param {string} s */ +const isInteger = (s) => Number.isInteger(Number(s)); + +const isText = request => request.headers.has("Content-Type") && + request.headers.get("Content-Type").startsWith("text/"); + +const wrapText = text => "```\n" + text + "```\n\n"; + +/** + * Converts a REST client request object into a Hurl request. + * + * @param {RestRequest} request - The REST client request object to be converted. + * @return {Promise} The converted Hurl request. + */ +const restCliRequest2Hurl = async (request) => { + let requestString = `${request.method} ${request.url}\n`; + request.headers.forEach((value, key) => requestString += `${key}: ${value}\n`); + + if (isText(request)) { + // requestString += "```\n" + request.body + "```\n\n"; + requestString += wrapText(request.body); + } else { + requestString += request.body + '\n'; + } + + try { + const { response } = await request.request(); + + const responseString = "HTTP 200\n" + (isText(request) + ? wrapText(response.getBody()) + : response.getBody()); + + return requestString + responseString + "\n"; + } catch (error) { + console.error(error); + return requestString + "\n"; + } +} + +/** + * Converts the entire file by iterating through the RestParser object and + * converting each request into an Hurl string using the restCliRequest2Hurl + * function. + * + * @param {RestParser} parser - The RestParser object that contains the requests to be converted. + * @return {Promise} A promise that resolves to the Hurl string representation of all the requests. + */ +const convertWholeFile = async (parser) => { + const nb = parser.count; + let hurlString = ""; + for (let i = 0; i < nb; i++) { + const request = await parser.get(i); + if (!request) { // Should not happen + console.error(`Request "${i}" not found.\nMaybe the examples.http file is wrong?`); + continue; + } + hurlString += await restCliRequest2Hurl(request) + '\n'; + } + return hurlString.trim(); +} + +///////////////////////////////////////////////////////////: + +const [, , instancePath, requestName] = process.argv; + +if (!instancePath) { + console.error("Instance path needed as a first paramater!"); + usage(1); +} + +if (process.argv.length > 4) { + console.error("Wrong number of parameters!"); + usage(2); +} + +const instanceName = instancePath.replace(/\/$/, '').split('/').pop(); + +// Get Response from examples.http file +const parser = new RestParser(); +try { + await parser.readFile(`./${instancePath}/examples.http`); + parser.files[0].vars.variables.baseUrl = `https://${instanceName}.services.istex.fr`; + parser.files[0].vars.variables.host = `https://${instanceName}.services.istex.fr`; +} catch (error) { + console.error(`No examples.http file found in ${instancePath}!\n`); + console.error(error); + process.exit(5); +} + +console.error(`Instance "${instanceName}" found.`); + +// Convert all requests +if (process.argv.length === 3) { + const hurlString = await convertWholeFile(parser); + console.log(hurlString); + process.exit(0); +} + +const requestId = isInteger(requestName) ? Number(requestName) : requestName; + +if (requestId === undefined) { + console.error("requestName needed as a second parameter (could be a string or an integer)."); + usage(3); +} + +const request = await parser.get(requestId); + +if (request) { + console.log(await restCliRequest2Hurl(request)); +} else { + console.error(`Request "${requestId}" not found.`); + usage(4); +} diff --git a/data-computer/examples.http b/data-computer/examples.http index bf0a54f..a9ad03c 100644 --- a/data-computer/examples.http +++ b/data-computer/examples.http @@ -1,9 +1,9 @@ # File Global Variables: Variables defined in Region without name or request @baseUrl = http://localhost:31976 #@baseUrl = https://data-computer.services.istex.fr/ -### -# @name retrieve +### +# @name v1Retrieve # @save POST {{baseUrl}}/v1/retrieve HTTP/1.1 Content-Type: application/json @@ -13,9 +13,9 @@ "value":"8RjaJDej5" } ] -### -# @name collect +### +# @name v1collect POST {{baseUrl}}/v1/collect?indent=true HTTP/1.1 Content-Type: application/json @@ -24,10 +24,9 @@ "value":"8RjaJDej5" } ] + ### - - -# # @name tree-segment +# @name v1baseLine POST {{baseUrl}}/v1/base-line HTTP/1.1 Content-Type: application/x-tar X-Hook: https://webhook.site/69300b22-a251-4c16-9905-f7ba218ae7e9 @@ -35,26 +34,25 @@ < ./example-json.tar.gz ### - -# @name tree-segment +# @name v1TreeSegment POST {{baseUrl}}/v1/tree-segment HTTP/1.1 Content-Type: application/x-tar X-Hook: https://webhook.site/69300b22-a251-4c16-9905-f7ba218ae7e9 < ./example-json.tar.gz -### -# @name graph-segment +### +# @name v1GraphSegment POST {{baseUrl}}/v1/graph-segment HTTP/1.1 Content-Type: application/x-tar X-Hook: https://webhook.site/69300b22-a251-4c16-9905-f7ba218ae7e9 < ./example-json.tar.gz -### -# @name lda +### +# @name v1Lda POST {{baseUrl}}/v1/lda HTTP/1.1 Content-Type: application/x-tar X-Hook: https://webhook.site/69300b22-a251-4c16-9905-f7ba218ae7e9 diff --git a/data-computer/swagger.json b/data-computer/swagger.json index c1f79b1..e85b6ff 100644 --- a/data-computer/swagger.json +++ b/data-computer/swagger.json @@ -1,6 +1,6 @@ { "info": { - "title": "data-computer - Calculs sur fichier coprus compressé", + "title": "data-computer - Calculs sur fichier corpus compressé", "summary": "Algorithmes de calculs sur un corpus compressé", "version": "1.6.1", "termsOfService": "https://objectif-tdm.inist.fr/", @@ -19,14 +19,14 @@ "x-profil": "Standard" } ], - "tags": [ - { - "name": "data-computer", - "description": "Calculs sur fichier coprus compressé", - "externalDocs": { - "description": "Plus de documentation", - "url": "https://gitbucket.inist.fr/tdm/web-services/tree/master/data-computer" - } - } - ] -} + "tags": [ + { + "name": "data-computer", + "description": "Calculs sur fichier corpus compressé", + "externalDocs": { + "description": "Plus de documentation", + "url": "https://gitbucket.inist.fr/tdm/web-services/tree/master/data-computer" + } + } + ] +} \ No newline at end of file diff --git a/data-computer/tests.hurl b/data-computer/tests.hurl new file mode 100644 index 0000000..6b6362a --- /dev/null +++ b/data-computer/tests.hurl @@ -0,0 +1,35 @@ +# WARNING: This file was not generated, but manually written. +# DON'T OVERWRITE IT +# Use it to test: +# npx hurl --test data-computer/tests.hurl + +POST https://data-computer.services.istex.fr/v1/tree-segment +content-type: application/x-tar +x-hook: https://webhook.site/69300b22-a251-4c16-9905-f7ba218ae7e9 +file,example-json.tar.gz; + +HTTP 200 +# Capture the computing token +[Captures] +computing_token: jsonpath "$[0].value" +[Asserts] +variable "computing_token" exists + +# There should be a waiting time, representing the time taken to process data. +# Fortunately, as the data is sparse, and the computing time is small, +# the need is small. + +POST https://data-computer.services.istex.fr/v1/retrieve +content-type: application/json +``` +[ + { + "value":"{{computing_token}}" + } +] +``` + +HTTP 200 +Content-Type: application/x-tar + +# TODO: ajouter les deux autres routes (v1GraphSegment, v1Lda) diff --git a/data-wrapper/README.md b/data-wrapper/README.md index 1a0ecd1..8fe1d88 100644 --- a/data-wrapper/README.md +++ b/data-wrapper/README.md @@ -2,12 +2,11 @@ Ces services permettent de convertir divers fichiers dans un format corpus (tar.gz) compatible avec tous les webservices "asynchnrones" -### v1/csv +## v1/csv Convertir un fichier csv en fichier corpus. -#### Exemple - +### Exemple ```bash curl -X 'POST' \ @@ -21,26 +20,22 @@ Last Action Hero,1993,John,McTierman,Arnold Schwarzenegger/Austin O\'Brien/Charles Dance/Bridget Wilson-Sampras,"6,2",http://www.imdb.com/title/tt0107362/' > out.tar.gz ``` -### v1/tar-tei2json +## v1/tar-tei2json -Convertir un fichier tar.gz contenant des fichiers tei. Le coprus produit contidenra les fichiers tei transformés en JSON +Convertir un fichier tar.gz contenant des fichiers tei. Le corpus produit contiendra les fichiers tei transformés en JSON -#### Exemple - +### Exemple ```bash cat ./example-tei.tar.gz |curl --data-binary @- "http://data-wrapper.tdmservices.intra.inist.fr/v1/tar-tei2json"> out.tar.gz ``` -### v1/tar-tei2jxml +## v1/tar-tei2jxml -Convertir un fichier tar.gz contenant des fichiers tei. Le coprus produit contidenra les fichiers tei transformés dans format XML simplifié. +Convertir un fichier tar.gz contenant des fichiers tei. Le corpus produit contiendra les fichiers tei transformés dans un format XML simplifié. -#### Exemple - +### Exemple ```bash cat ./example-tei.tar.gz |curl --data-binary @- "http://data-wrapper.tdmservices.intra.inist.fr/v1/tar-tei2xml"> out.tar.gz ``` - - diff --git a/data-wrapper/examples.http b/data-wrapper/examples.http index 67436b2..824d668 100644 --- a/data-wrapper/examples.http +++ b/data-wrapper/examples.http @@ -1,8 +1,8 @@ # File Global Variables: Variables defined in Region without name or request #@baseUrl = http://localhost:31976 @baseUrl = http://data-wrapper-2.tdmservices.intra.inist.fr/ -### +### # @name csv # @save POST {{baseUrl}}/v1/csv?compress=false HTTP/1.1 @@ -13,23 +13,21 @@ Rocky 2,1979,Sylvester,Stallone,Sylvester Stallone/Talia Shire/Carl Weathers/Burt Young/Burgess Meredith/Tony Burton/Frank Stallone/Stu Nahan,"7,2",http://www.imdb.com/title/tt0079817/ Rocky 3,1982,Sylvester,Stallone,Sylvester Stallone/Talia Shire/Carl Weathers/Burt Young/Burgess Meredith/Mister T./Hulk Hogan/Tony Burton,"6,7",http://www.imdb.com/title/tt0084602/ Last Action Hero,1993,John,McTierman,Arnold Schwarzenegger/Austin O'Brien/Charles Dance/Bridget Wilson-Sampras,"6,2",http://www.imdb.com/title/tt0107362/ + ### - - -# @name tar-tei2json +# @name tarTei2json # @save # @extension tar.gz POST {{baseUrl}}/v1/tar-tei2json.ini HTTP/1.1 Content-Type: application/x-tar < ./example-tei.tar.gz -### -# @name tar-tei2xml +### +# @name tarTei2xml # @save # @extension tar.gz POST {{baseUrl}}/v1/tar-tei2xml.ini HTTP/1.1 Content-Type: application/x-tar < ./example-tei.tar.gz -# diff --git a/domains-classifier/README.md b/domains-classifier/README.md index f1d67e9..9276c58 100644 --- a/domains-classifier/README.md +++ b/domains-classifier/README.md @@ -1,9 +1,17 @@ -## domains-classifier = prédiction de domaines en cascade -Service de **classification de document en domaines scientifiques** qui utilise une succession arborescente de modéles de type Fasttext (embeddings et classification) pour predire un code de classement. -Les domaines scientifique (codes) proposés proviennent du plan de classement Pascal/Francis (https://pascal-francis.inist.fr/aide-discipline/). Les modèles ont été entrainé sur 10 années de notices issues de la base **Pascal et Francis** (https://pascal-francis.inist.fr/cms/?lang=fr) , soit 2.961.162 notices. +# domains-classifier = prédiction de domaines en cascade -Prend en entrée un fichier json au format id/value -``` +Service de **classification de document en domaines scientifiques** qui utilise +une succession arborescente de modéles de type Fasttext (embeddings et +classification) pour predire un code de classement. +Les domaines scientifique (codes) proposés proviennent du plan de classement +Pascal/Francis (https://pascal-francis.inist.fr/aide-discipline/). Les modèles +ont été entrainé sur 10 années de notices issues de la base **Pascal et +Francis** (https://pascal-francis.inist.fr/cms/?lang=fr), soit 2.961.162 +notices. + +Prend en entrée un fichier json au format `id/value` + +```json [ {"idt":"11-0278198","value":"reduction fear child comparison positive information imagery control condition study effect ... "}, @@ -11,31 +19,30 @@ ] ``` -Produit en sortie un fichier json avec n codes -``` +Produit en sortie un fichier json avec n codes + +```json {"idt": "05-0473464", "value": [{"code": "001", "confidence": 1.0000014305114746, "rang": 1}, {"code": "001D" , "confidence": 1.0000100135803223, "rang": 2}, {"code": "001D10", "confidence": 0.9192302227020264, "rang": 3}]} {"idt": "05-0382444", "value": [{"code": "001", "confidence": 0.9999098777770996, "rang": 1}, {"code": "001B" , "confidence": 1.000008225440979, "rang": 2}, {"code": "001B30", "confidence": 0.9999992847442627, "rang": 3 }]} - ``` - -#### Utilisation -##### Sollicitation du WebService +## Utilisation -https://domains-classifier-2.services.inist.fr/v1/en/classify?indent=true&deep=2 +### Sollicitation du WebService - avec `deep = n , n est profondeur de la prédiction, fournit n codes, de [ 1 - 3 ] (3 par défaut)` + +avec `deep = n`, n est profondeur de la prédiction, fournit n codes, de [ 1 - 3 ] (3 par défaut) -##### Exemple d'appel au classifieur, avec profondeur=2 +### Exemple d'appel au classifieur, avec profondeur=2 -``` +```bash cat < 2: - for borg in uniqueOrg: - if entity.text.lower().startswith(borg): - basicOrg.append(borg) - if entity.text not in orgL: - orgL.append(entity.text) - if len(org)>1: - for k in ["à","de","l'","d'","'","du","la"]: - if org[-2] == k: - if org[-1] not in locL: - locL.append(org[-1]) - break - - returnDic = {"loc":locL,"org":orgL,"basicOrg":basicOrg,"operation":operation} - data['value'] = returnDic - sys.stdout.write(json.dumps(data)) - sys.stdout.write('\n') \ No newline at end of file diff --git a/ner-tagger/README.md b/ner-tagger/README.md new file mode 100755 index 0000000..c05d88a --- /dev/null +++ b/ner-tagger/README.md @@ -0,0 +1,108 @@ +# ner-tagger + +## geoTagger + +Cette instance propose un outil de détéction d'entités nommées dans des textes anglais. +Attention : Ce web service est, de par sa conception, assez lent. Il est donc normal que le traitement d'une grosse masse de données prenne un peu plus de temps que les autres web services. + +### utilisation + +- [v1/geoTagger/geoTagger](#v1%2fgeoTagger) + +Ce service permet de détecter des entités géographiques dans des textes anglais. +Ce web service prend en entrée du JSON avec deux champs: `id` et `value`, et renvoie un JSON +avec les entités géographiques détéctées dans le champ `value`. + +### Exemple + +```bash +$ cat < 2: + for borg in uniqueOrg: + if entity.text.lower().startswith(borg): + basicOrg.append(borg) + if entity.text not in orgL: + orgL.append(entity.text) + if len(org)>1: + for k in ["à","de","l'","d'","'","du","la"]: + if org[-2] == k: + if org[-1] not in locL: + locL.append(org[-1]) + break + + returnDic = {"loc":locL,"org":orgL,"basicOrg":basicOrg,"operation":operation} + data['value'] = returnDic + sys.stdout.write(json.dumps(data)) + sys.stdout.write('\n') \ No newline at end of file diff --git a/package.json b/package.json index 55e237f..ed65b33 100644 --- a/package.json +++ b/package.json @@ -20,12 +20,13 @@ "author": "", "license": "CECILL-2.1", "devDependencies": { + "@orangeopensource/hurl": "4.1.0", "flat": "5.0.2", "rest-cli": "1.8.13" }, "dependencies": { - "@ezs/basics": "2.5.4", - "@ezs/core": "3.0.6", + "@ezs/basics": "2.5.5", + "@ezs/core": "3.0.7", "@ezs/spawn": "1.4.5" } -} +} \ No newline at end of file