fixed merge conflicts in Gemfile and Schema.rb

Reorganized gemfile and commented out unused gems

fixed merge conflict with schema.rb

Updated Gemfile to use Rails 4.2.7, fixed some minor issues with locale initializer (#21) ...

* Migrated codebase from rails 4.0 to 4.2, also removed most of the version specifications from the gem dependencies and ran bundle update

* Commented out api test since it is incomplete and references a missing fixture. Also commented out stubbed performance test because that functionality is no longer a part of rails

* renamed config/environment to config/environments which is what rails is looking for. Commented out the DOCX mime type reference because it is already added by rails. Commented out the belongs_to_and has_many line in models/user because it is already defined by rolify gem

* updated ruby version to 2.1.10 for devise gem

* Added line to have tests auto-run db:migrate

* Ran db:migrate to update the schema since there were some pending migrations preventing travis from running rake

* removed schem_migration line from test_helper as it did not seem to help with the schema migration issue in travis

* Added fb:migrate and db:test:prepare commands to travis file

* replaced deprecated ActiveRecord::Migrator call in old db migration file

* Removed rake db tasks from travis file now that the offending migration script has been fixed

* added rake db:test:prepare back to travis file and added call to run default test task

* Updated find_by_all to the newer and more accepted 'where'

* Updated routes.rb to remove unecessary create and edit route definitions

* Fixed stack too deep error by commenting out circular reference to sections in the version model. Changed deprecated '.find(:all, :order => 'field ASC')' format to '.all.order('field')'

* removed redundant bootstrap file. using bootstrap.min.js going forward. updated css to default align all text to left

* Added js preventDefault to modal popup functions to prevent them from appearing and immediately disappering

* Replaced deprecated link_to_function. the call in the helpers/application.rb should eventually be rethought. We shouldn't be using the onclick function of an html element directly, we should use the jquery approach: .click()

* removed deprecated link_to_object function from helpers/application.rb and added client side js script to add new options to a question.

* Upgraded select2 js file

* Removed all accepts_nested_attributes_for for belongs_to associations because they were creating circular calls in ActiveRecord.

* Fixed add/remove option js

* Fixed i18n calls in erb files that were missing an equal sign (e.g. <% t('value'') %> --> <%= t('value') %> so that the value will appear to the user. Also updated i18n calls from admin.js with 'js.' prefix)

* Removed deprecated uniq_by call on ActiveRecord collection

* Updated textbox and textarea sizes on contact_us form. added a route for the 'future plans' page

* Added 'self' prefix to dmptemplate references in models/project.rb because of a scoping issue. tweaks to select2 dropdowns on create project page

* Moved i18n calls out of string content in toolbar.js

* Removed outdated i%() array initializers because they now create arrays of symbols instead of strings

* Fixes to the plan settings page

* Fixed issues with settings hash

* Removed some debug statements

* Added the new rails 4.2 byebug gem

* added rails 4 bin

* added rails 4 bin

* tweaks to env and session_store cookie domain

* Updated routes to make lock/unlock paths use json by default

* updated routes for lock/unlock section on plan form

* fixed issue with lock/unlock using .json extension in ajax call. fixed unknown i18n references in plans.js

* Fixed issue with location of web-console in the Gemfile.

* Updated static page links so that they use localized paths. Added new locized_routes flag to the contact-us initializer and upgraded its gem

* Updated gemfile to specify specific version of contact-us

* Added some bug fixes that were a part of an old 'upgrade-bootstrap' branch but were missed when creating the rails-4-2 pull request. Also replaces the static page urls with localized versions

* removed console.log debug statements

* Organized locale files for dependencies into subdirectories

* Added localization files for the contact-us gem

* Updated load path on locales initializer so that it understands subdirectories. separated en contact-us locale into en-Uk and en-US. updated contact_us page to use gem's built in localization files

* Switched the dmptool to use en-US localization

* updated en-UK and en-US locale files to make sure that they use their respective locale ids instead of en. Added a branding yaml file for org and app names

* Change name of the application's root module from DMPonline4 to DMPRoadmap

* Began removing branding variables from the locales file and placed them in branding.yml

* finished initial branding of static pages

* Created DMPRoadmap logo and swapped out JISC logo for UC3 logo.

* commented out version specification in Gemfile for the contact-us gem

* Capified the application

* configuring capistrano

* Updated the contact_us gem version for localized paths

* capistrano config

* updated contact_us gem version

* changed server connection methodology

* removed Gemfile.lock, contact_us initializer, and /config/environments files from gitignore

* added initializers that were previsouly ignored by gitignore

* Changed DMPonline references to DMPRoadmap

* removed web_console reference in config/environments/development.rb because it is causing issues with capistrano deploy and does not seem to be needed

* removed web_console from gemfile because its causing deployment issues

* trying to remove web_console

* Revert "trying to remove web_console"

This reverts commit 7a1b714.

* Revert "removed web_console from gemfile because its causing deployment issues"

This reverts commit f8f8316.

* removed Gemfile.lock from .gitignore

* Updated config.ru to newer rails style

* tweaked deploy script

* added phusion passenger start/stop to deploy.rb

* Added passenger to gemfile

* Added passenger to gemfile

* tweaks to cap deploy.rb

* Changed staging.rb to stage.rb for capistrrano

* commented out line in config.ru

* commented out line in config.ru

* Removed capistrano deployment files

* Removed capfile

* reran bundle install to build Gemfile.lock

* Updated version of ruby to 2.2.2 in travis

* rebuilt db schema

* added length specification to a few indexes that are causing travis mysql db setup issues

* Switched travis to use mysql 5.6

* Switched travis to use mysql 5.6 and added params to create table to allow for >767 bytes indexes

* removed mysql 5.6 specifications form travis file. added limits to size of friendly_id_slugs index

* removed mysql 5.6 specifications form travis file. added limits to size of friendly_id_slugs index

* fixed merge conflict in .travis file

* Updated gemfile to specify >= ruby 2.2.2. Updated Rails to the latest version due to an XSS vulnerability. updated locale initializer to handle migration issue where it was checking default_location in langauges table before the column exists. Also added check for instances where no default langauge is specified. Rebuilt schema.rb. Fixed issue with seeds.rb reported by Weiwei

* Added languages to the seeds.rb file

* Fixed syntax error in environments/test.rb created during merge conflict resolution

Updated gemfile to specify >= ruby 2.2.2. Updated Rails to the latest version due to an XSS vulnerability. updated locale initializer to handle migration issue where it was checking default_location in langauges table before the column exists. Also added check for instances where no default langauge is specified. Rebuilt schema.rb. Fixed issue with seeds.rb reported by Weiwei

allow org admin to upload logo through admin UI

Development (#17) ...

* Migrated codebase from rails 4.0 to 4.2, also removed most of the version specifications from the gem dependencies and ran bundle update

* Commented out api test since it is incomplete and references a missing fixture. Also commented out stubbed performance test because that functionality is no longer a part of rails

* renamed config/environment to config/environments which is what rails is looking for. Commented out the DOCX mime type reference because it is already added by rails. Commented out the belongs_to_and has_many line in models/user because it is already defined by rolify gem

* updated ruby version to 2.1.10 for devise gem

* Added line to have tests auto-run db:migrate

* Ran db:migrate to update the schema since there were some pending migrations preventing travis from running rake

* removed schem_migration line from test_helper as it did not seem to help with the schema migration issue in travis

* Added fb:migrate and db:test:prepare commands to travis file

* replaced deprecated ActiveRecord::Migrator call in old db migration file

* Removed rake db tasks from travis file now that the offending migration script has been fixed

* added rake db:test:prepare back to travis file and added call to run default test task

* Updated find_by_all to the newer and more accepted 'where'

* Updated routes.rb to remove unecessary create and edit route definitions

* Fixed stack too deep error by commenting out circular reference to sections in the version model. Changed deprecated '.find(:all, :order => 'field ASC')' format to '.all.order('field')'

* removed redundant bootstrap file. using bootstrap.min.js going forward. updated css to default align all text to left

* Added js preventDefault to modal popup functions to prevent them from appearing and immediately disappering

* Replaced deprecated link_to_function. the call in the helpers/application.rb should eventually be rethought. We shouldn't be using the onclick function of an html element directly, we should use the jquery approach: .click()

* removed deprecated link_to_object function from helpers/application.rb and added client side js script to add new options to a question.

* Upgraded select2 js file

* Removed all accepts_nested_attributes_for for belongs_to associations because they were creating circular calls in ActiveRecord.

* Fixed add/remove option js

* Fixed i18n calls in erb files that were missing an equal sign (e.g. <% t('value'') %> --> <%= t('value') %> so that the value will appear to the user. Also updated i18n calls from admin.js with 'js.' prefix)

* Removed deprecated uniq_by call on ActiveRecord collection

* Updated textbox and textarea sizes on contact_us form. added a route for the 'future plans' page

* Added 'self' prefix to dmptemplate references in models/project.rb because of a scoping issue. tweaks to select2 dropdowns on create project page

* Moved i18n calls out of string content in toolbar.js

* Removed outdated i%() array initializers because they now create arrays of symbols instead of strings

* Fixes to the plan settings page

* Fixed issues with settings hash

* Removed some debug statements

* Added the new rails 4.2 byebug gem

* added rails 4 bin

* added rails 4 bin

* tweaks to env and session_store cookie domain

* Updated routes to make lock/unlock paths use json by default

* updated routes for lock/unlock section on plan form

* fixed issue with lock/unlock using .json extension in ajax call. fixed unknown i18n references in plans.js

* Fixed issue with location of web-console in the Gemfile.

* Updated static page links so that they use localized paths. Added new locized_routes flag to the contact-us initializer and upgraded its gem

* Updated gemfile to specify specific version of contact-us

* Added some bug fixes that were a part of an old 'upgrade-bootstrap' branch but were missed when creating the rails-4-2 pull request. Also replaces the static page urls with localized versions

* removed console.log debug statements

* Organized locale files for dependencies into subdirectories

* Added localization files for the contact-us gem

* Updated load path on locales initializer so that it understands subdirectories. separated en contact-us locale into en-Uk and en-US. updated contact_us page to use gem's built in localization files

* Switched the dmptool to use en-US localization

* updated en-UK and en-US locale files to make sure that they use their respective locale ids instead of en. Added a branding yaml file for org and app names

* Change name of the application's root module from DMPonline4 to DMPRoadmap

* Began removing branding variables from the locales file and placed them in branding.yml

* finished initial branding of static pages

* Created DMPRoadmap logo and swapped out JISC logo for UC3 logo.

* commented out version specification in Gemfile for the contact-us gem

* Capified the application

* configuring capistrano

* Updated the contact_us gem version for localized paths

* capistrano config

* updated contact_us gem version

* changed server connection methodology

* removed Gemfile.lock, contact_us initializer, and /config/environments files from gitignore

* added initializers that were previsouly ignored by gitignore

* Changed DMPonline references to DMPRoadmap

* removed web_console reference in config/environments/development.rb because it is causing issues with capistrano deploy and does not seem to be needed

* removed web_console from gemfile because its causing deployment issues

* trying to remove web_console

* Revert "trying to remove web_console"

This reverts commit 7a1b714.

* Revert "removed web_console from gemfile because its causing deployment issues"

This reverts commit f8f8316.

* removed Gemfile.lock from .gitignore

* Updated config.ru to newer rails style

* tweaked deploy script

* added phusion passenger start/stop to deploy.rb

* Added passenger to gemfile

* Added passenger to gemfile

* tweaks to cap deploy.rb

* Changed staging.rb to stage.rb for capistrrano

* commented out line in config.ru

* commented out line in config.ru

* Removed capistrano deployment files

* Removed capfile

* reran bundle install to build Gemfile.lock

Removed capistrano deployment files

Added passenger to gemfile

Revert "removed web_console from gemfile because its causing deployment issues" ...

This reverts commit f8f8316.

removed web_console from gemfile because its causing deployment issues

Branding changes (#14) ...

* Migrated codebase from rails 4.0 to 4.2, also removed most of the version specifications from the gem dependencies and ran bundle update

* Commented out api test since it is incomplete and references a missing fixture. Also commented out stubbed performance test because that functionality is no longer a part of rails

* renamed config/environment to config/environments which is what rails is looking for. Commented out the DOCX mime type reference because it is already added by rails. Commented out the belongs_to_and has_many line in models/user because it is already defined by rolify gem

* updated ruby version to 2.1.10 for devise gem

* Added line to have tests auto-run db:migrate

* Ran db:migrate to update the schema since there were some pending migrations preventing travis from running rake

* removed schem_migration line from test_helper as it did not seem to help with the schema migration issue in travis

* Added fb:migrate and db:test:prepare commands to travis file

* replaced deprecated ActiveRecord::Migrator call in old db migration file

* Removed rake db tasks from travis file now that the offending migration script has been fixed

* added rake db:test:prepare back to travis file and added call to run default test task

* Updated find_by_all to the newer and more accepted 'where'

* Updated routes.rb to remove unecessary create and edit route definitions

* Fixed stack too deep error by commenting out circular reference to sections in the version model. Changed deprecated '.find(:all, :order => 'field ASC')' format to '.all.order('field')'

* removed redundant bootstrap file. using bootstrap.min.js going forward. updated css to default align all text to left

* Added js preventDefault to modal popup functions to prevent them from appearing and immediately disappering

* Replaced deprecated link_to_function. the call in the helpers/application.rb should eventually be rethought. We shouldn't be using the onclick function of an html element directly, we should use the jquery approach: .click()

* removed deprecated link_to_object function from helpers/application.rb and added client side js script to add new options to a question.

* Upgraded select2 js file

* Removed all accepts_nested_attributes_for for belongs_to associations because they were creating circular calls in ActiveRecord.

* Fixed add/remove option js

* Fixed i18n calls in erb files that were missing an equal sign (e.g. <% t('value'') %> --> <%= t('value') %> so that the value will appear to the user. Also updated i18n calls from admin.js with 'js.' prefix)

* Removed deprecated uniq_by call on ActiveRecord collection

* Updated textbox and textarea sizes on contact_us form. added a route for the 'future plans' page

* Added 'self' prefix to dmptemplate references in models/project.rb because of a scoping issue. tweaks to select2 dropdowns on create project page

* Moved i18n calls out of string content in toolbar.js

* Removed outdated i%() array initializers because they now create arrays of symbols instead of strings

* Fixes to the plan settings page

* Fixed issues with settings hash

* Removed some debug statements

* Added the new rails 4.2 byebug gem

* added rails 4 bin

* added rails 4 bin

* tweaks to env and session_store cookie domain

* Updated routes to make lock/unlock paths use json by default

* updated routes for lock/unlock section on plan form

* fixed issue with lock/unlock using .json extension in ajax call. fixed unknown i18n references in plans.js

* Fixed issue with location of web-console in the Gemfile.

* Updated static page links so that they use localized paths. Added new locized_routes flag to the contact-us initializer and upgraded its gem

* Updated gemfile to specify specific version of contact-us

* Added some bug fixes that were a part of an old 'upgrade-bootstrap' branch but were missed when creating the rails-4-2 pull request. Also replaces the static page urls with localized versions

* removed console.log debug statements

* Organized locale files for dependencies into subdirectories

* Added localization files for the contact-us gem

* Updated load path on locales initializer so that it understands subdirectories. separated en contact-us locale into en-Uk and en-US. updated contact_us page to use gem's built in localization files

* updated en-UK and en-US locale files to make sure that they use their respective locale ids instead of en. Added a branding yaml file for org and app names

* Change name of the application's root module from DMPonline4 to DMPRoadmap

* Began removing branding variables from the locales file and placed them in branding.yml

* finished initial branding of static pages

* Created DMPRoadmap logo and swapped out JISC logo for UC3 logo.

* commented out version specification in Gemfile for the contact-us gem

* Updated the contact_us gem version for localized paths

* updated contact_us gem version

* removed Gemfile.lock, contact_us initializer, and /config/environments files from gitignore

* added initializers that were previsouly ignored by gitignore

Merge branch 'dmptool' into production

Updated the contact_us gem version for localized paths

Capified the application

commented out version specification in Gemfile for the contact-us gem

Added in missing bug fixes (#13) ...

* Migrated codebase from rails 4.0 to 4.2, also removed most of the version specifications from the gem dependencies and ran bundle update

* Commented out api test since it is incomplete and references a missing fixture. Also commented out stubbed performance test because that functionality is no longer a part of rails

* renamed config/environment to config/environments which is what rails is looking for. Commented out the DOCX mime type reference because it is already added by rails. Commented out the belongs_to_and has_many line in models/user because it is already defined by rolify gem

* updated ruby version to 2.1.10 for devise gem

* Added line to have tests auto-run db:migrate

* Ran db:migrate to update the schema since there were some pending migrations preventing travis from running rake

* removed schem_migration line from test_helper as it did not seem to help with the schema migration issue in travis

* Added fb:migrate and db:test:prepare commands to travis file

* replaced deprecated ActiveRecord::Migrator call in old db migration file

* Removed rake db tasks from travis file now that the offending migration script has been fixed

* added rake db:test:prepare back to travis file and added call to run default test task

* Updated find_by_all to the newer and more accepted 'where'

* Updated routes.rb to remove unecessary create and edit route definitions

* Fixed stack too deep error by commenting out circular reference to sections in the version model. Changed deprecated '.find(:all, :order => 'field ASC')' format to '.all.order('field')'

* removed redundant bootstrap file. using bootstrap.min.js going forward. updated css to default align all text to left

* Added js preventDefault to modal popup functions to prevent them from appearing and immediately disappering

* Replaced deprecated link_to_function. the call in the helpers/application.rb should eventually be rethought. We shouldn't be using the onclick function of an html element directly, we should use the jquery approach: .click()

* removed deprecated link_to_object function from helpers/application.rb and added client side js script to add new options to a question.

* Upgraded select2 js file

* Removed all accepts_nested_attributes_for for belongs_to associations because they were creating circular calls in ActiveRecord.

* Fixed add/remove option js

* Fixed i18n calls in erb files that were missing an equal sign (e.g. <% t('value'') %> --> <%= t('value') %> so that the value will appear to the user. Also updated i18n calls from admin.js with 'js.' prefix)

* Removed deprecated uniq_by call on ActiveRecord collection

* Updated textbox and textarea sizes on contact_us form. added a route for the 'future plans' page

* Added 'self' prefix to dmptemplate references in models/project.rb because of a scoping issue. tweaks to select2 dropdowns on create project page

* Moved i18n calls out of string content in toolbar.js

* Removed outdated i%() array initializers because they now create arrays of symbols instead of strings

* Fixes to the plan settings page

* Fixed issues with settings hash

* Removed some debug statements

* Added the new rails 4.2 byebug gem

* added rails 4 bin

* added rails 4 bin

* tweaks to env and session_store cookie domain

* Updated routes to make lock/unlock paths use json by default

* updated routes for lock/unlock section on plan form

* fixed issue with lock/unlock using .json extension in ajax call. fixed unknown i18n references in plans.js

* Fixed issue with location of web-console in the Gemfile.

* Updated static page links so that they use localized paths. Added new locized_routes flag to the contact-us initializer and upgraded its gem

* Updated gemfile to specify specific version of contact-us

* Added some bug fixes that were a part of an old 'upgrade-bootstrap' branch but were missed when creating the rails-4-2 pull request. Also replaces the static page urls with localized versions

* removed console.log debug statements

merged conflicts

Updated gemfile to specify specific version of contact-us

Sam's fix for the API token issue (#11) ...

* added data structures for testing

* renamed token_permission_type to plural to follow convention of fixtures

* added gem to allow testing of controllers

* began implimenting testing for projects controller

* fixed auth to reject empty string

* added data structures for testing

* added data structures for testing

* removed old unnecissary data structures from fixtures

* added forgotten view for org-admins giving user's api permissions

* updated .gitignore

* added gem to allow testing of controllers

* began implimenting testing for projects controller

* fixed auth to reject empty string

* added data structures for testing

* added data structures for testing

* removed old unnecissary data structures from fixtures

* added forgotten view for org-admins giving user's api permissions

* updated .gitignore

* fixed leftover merge conflict in .gitignore

* updated org-admin view of users for rails 4.2 compatability

* fiexed a bug where user's api token permissions wouldnt display

* fixed syntax error

* changed guidance_group to guidance_groups for consistancy with api spec

* fix roadmap route

* bugfixing auth for api

* removed token_permission as it was accidentially re-added by a merge

* added gem to allow testing of controllers

* began implimenting testing for projects controller

* fixed auth to reject empty string

* added data structures for testing

* added data structures for testing

* removed old unnecissary data structures from fixtures

* added forgotten view for org-admins giving user's api permissions

* updated .gitignore

* removed old unnecissary data structures from fixtures

* updated .gitignore

* updated org-admin view of users for rails 4.2 compatability

* fiexed a bug where user's api token permissions wouldnt display

* fixed syntax error

* changed guidance_group to guidance_groups for consistancy with api spec

* bugfixing auth for api

* modified schema

* removed admin interface to token_permission, another forgotten side-effect

* removed admin interface to token_permission, another forgotten side-effect

Rails 4.2 (#10) ...

* Migrated codebase from rails 4.0 to 4.2, also removed most of the version specifications from the gem dependencies and ran bundle update

* Commented out api test since it is incomplete and references a missing fixture. Also commented out stubbed performance test because that functionality is no longer a part of rails

* renamed config/environment to config/environments which is what rails is looking for. Commented out the DOCX mime type reference because it is already added by rails. Commented out the belongs_to_and has_many line in models/user because it is already defined by rolify gem

* updated ruby version to 2.1.10 for devise gem

* Added line to have tests auto-run db:migrate

* Ran db:migrate to update the schema since there were some pending migrations preventing travis from running rake

* removed schem_migration line from test_helper as it did not seem to help with the schema migration issue in travis

* Added fb:migrate and db:test:prepare commands to travis file

* replaced deprecated ActiveRecord::Migrator call in old db migration file

* Removed rake db tasks from travis file now that the offending migration script has been fixed

* added rake db:test:prepare back to travis file and added call to run default test task

* Updated find_by_all to the newer and more accepted 'where'

* Updated routes.rb to remove unecessary create and edit route definitions

* Fixed stack too deep error by commenting out circular reference to sections in the version model. Changed deprecated '.find(:all, :order => 'field ASC')' format to '.all.order('field')'

* removed redundant bootstrap file. using bootstrap.min.js going forward. updated css to default align all text to left

* Added js preventDefault to modal popup functions to prevent them from appearing and immediately disappering

* Replaced deprecated link_to_function. the call in the helpers/application.rb should eventually be rethought. We shouldn't be using the onclick function of an html element directly, we should use the jquery approach: .click()

* removed deprecated link_to_object function from helpers/application.rb and added client side js script to add new options to a question.

* Upgraded select2 js file

* Removed all accepts_nested_attributes_for for belongs_to associations because they were creating circular calls in ActiveRecord.

* Fixed add/remove option js

* Fixed i18n calls in erb files that were missing an equal sign (e.g. <% t('value'') %> --> <%= t('value') %> so that the value will appear to the user. Also updated i18n calls from admin.js with 'js.' prefix)

* Removed deprecated uniq_by call on ActiveRecord collection

* Updated textbox and textarea sizes on contact_us form. added a route for the 'future plans' page

* Added 'self' prefix to dmptemplate references in models/project.rb because of a scoping issue. tweaks to select2 dropdowns on create project page

* Moved i18n calls out of string content in toolbar.js

* Removed outdated i%() array initializers because they now create arrays of symbols instead of strings

* Fixes to the plan settings page

* Fixed issues with settings hash

* Removed some debug statements

* Added the new rails 4.2 byebug gem

* added rails 4 bin

* added rails 4 bin

* tweaks to env and session_store cookie domain

* Updated routes to make lock/unlock paths use json by default

* updated routes for lock/unlock section on plan form

* fixed issue with lock/unlock using .json extension in ajax call. fixed unknown i18n references in plans.js

* Fixed issue with location of web-console in the Gemfile.

Fixed merge conflicts API/I18n -> Rails 4.2

Merged conflicts

Fixed issue with location of web-console in the Gemfile.

Added the new rails 4.2 byebug gem

removed a duplicate gem and cleaned up formatting

added "yard" gem and dependancy

Migrated codebase from rails 4.0 to 4.2, also removed most of the version specifications from the gem dependencies and ran bundle update

Removed duplicate reference to i18n-js gems in the gemfile

Rebased development branch and corrected merge conflicts